Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0167
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    35   0.050
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    30   1.9  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.3  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   4.3  
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ...    29   4.3  
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    28   5.7  
At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family p...    28   7.6  
At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family p...    28   7.6  
At3g62370.1 68416.m07006 expressed protein                             28   7.6  
At2g47390.1 68415.m05915 expressed protein                             28   7.6  
At4g29310.1 68417.m04190 expressed protein                             27   10.0 
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    27   10.0 
At3g47910.1 68416.m05224 expressed protein low similarity to non...    27   10.0 
At1g15030.1 68414.m01796 expressed protein                             27   10.0 

>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -2

Query: 340 DRAPLPPNRVSNETMKVVVFQRRSRETISTYATPLMSPYNARLESSSTGSS 188
           +RAPLP   V  E +  + F +R +ET  T    ++S  N +  +S  GS+
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKETQGTGRRQVLSTVNRQDANSDVGST 57


>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -2

Query: 346 IIDRAPLPPNRVSNETMKVVVFQRRSRETISTYATPLMSPYNARLESSSTGSSFPADSPK 167
           +ID A        N    +VV     +      A+ + SP+N+ L   S  SS  +D   
Sbjct: 72  LIDFAGSGGGEGKNVGEDLVVLLYHLQHACKRIASLVASPFNSSLGKLSVNSSSGSDRDA 131

Query: 166 PVPLAVVSLD 137
           P PL +VS D
Sbjct: 132 PKPLDIVSND 141


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 515 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 628
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 479 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 363
           +P  SNS P +VL   + A  + GD     H TT+H W+ET
Sbjct: 5   LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45


>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
           F-box family protein
          Length = 379

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 391 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISTYA 245
           S LC LG+  R PAD I+   L   R+    M  +V  R S + I+  A
Sbjct: 54  SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIAVKA 101


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 61  GSQLPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKK 192
           G  LP + +SD +  INE+   P   +AK   +E   +   GK+
Sbjct: 70  GGGLPNNGVSDTNSQINEVTVTP-QVIAKETVKENGLQKNGGKR 112


>At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 510 PRTPALFFDRCTAPVKLPAW 451
           PR P+ FF R T P  +P W
Sbjct: 24  PRPPSEFFSRFTVPKSVPKW 43


>At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 510 PRTPALFFDRCTAPVKLPAW 451
           PR P+ FF R T P  +P W
Sbjct: 24  PRPPSEFFSRFTVPKSVPKW 43


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 464 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 369
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


>At2g47390.1 68415.m05915 expressed protein
          Length = 961

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = -2

Query: 415 TATSVSATSPLCTLGTKHRAPA----DIIDRAPLPPNRVSNETMKVVVFQRRSRETISTY 248
           +A++ +       +GT +R P     DI+D  P+P    S    K++  +RR+   ++  
Sbjct: 93  SASATATEDDELAIGTGYRLPPPEIRDIVDAPPVPALSFSPHRDKILFLKRRALPPLADL 152

Query: 247 ATP 239
           A P
Sbjct: 153 ARP 155


>At4g29310.1 68417.m04190 expressed protein
          Length = 424

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -3

Query: 723 IEGSKSNVAMNAWLPQASYPCGNFSGTSC*KLFILKDR*AVLSQSLCVLNIWIK 562
           I G K ++ ++ +  +  + CG  SG    K+ +  D  A LS+++   N W K
Sbjct: 85  ISGKKISLRVSVYAGRTGHTCGVASGKLLGKVEVAVDLAAALSRTVAFHNGWKK 138


>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
 Frame = -2

Query: 415 TATSVS-ATSPLCTLGTKHRAPADIIDRAPLPPNRVS-------NETMKVVVFQRRSRET 260
           ++++VS ATSP  ++  K  +P       P PP   S         T        +S  T
Sbjct: 189 SSSAVSPATSPPGSMAPKSGSPVSPTTSPPAPPKSTSPVSPSSAPMTSPPAPMAPKSSST 248

Query: 259 ISTYATPLMSPYNARL-ESSSTGSSFPADSPKPVP 158
           I   + P+ SP  +   +SSS  S+ P  SP   P
Sbjct: 249 IPPSSAPMTSPPGSMAPKSSSPVSNSPTVSPSLAP 283


>At3g47910.1 68416.m05224 expressed protein low similarity to
            nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
            GI:189036; contains Pfam profiles PF04780: Protein of
            unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1290

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 379  TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 284
            T+G+ HR+ AD ++ +PLP   V + +   +V
Sbjct: 972  TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003


>At1g15030.1 68414.m01796 expressed protein
          Length = 360

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
 Frame = +1

Query: 61  GSQLPRHLISDA-----HEWINEI-PTVPIYYLAKPQPRERAWENQRGKKTLLSLTLVW 219
           GS L +H +S+A       +++ + P+VP +YL+K   RER   +   +     L  VW
Sbjct: 33  GSALLKHHVSEASSSNVERFLDSVTPSVPAHYLSKTIVRERGGSDVESQVPYFLLGDVW 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,507,512
Number of Sequences: 28952
Number of extensions: 362258
Number of successful extensions: 1025
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)