Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0166
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    31   0.16 
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    29   0.37 
SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac...    25   6.0  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    25   6.0  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.0  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   7.9  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -3

Query: 159  IGFVNEVVVFLVNAILSCGFRINEAILHLCYVNFLQHFHIHKHFRVY 19
            I  + + V  +++A++  G   + ++L  C+VN   H   H+  R+Y
Sbjct: 917  IHVIEQTVKTVISALIRLGKDFDSSLLVSCFVNAFPHIPQHRRLRLY 963


>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 340 YWLVTTLSVLPMDLVRFPNS 399
           YW++TTLS+ P DLVR  N+
Sbjct: 108 YWMMTTLSLEPGDLVRVINT 127


>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +1

Query: 46  EVLQKIYVTKMQDGLINPEAAAKYGIHKENDYFVYKANYSNAVLYNSEV 192
           +  + +YV+K+ D  I  E   K   H+E  +F +  +    +L+ S++
Sbjct: 122 QTYEDVYVSKVLDPRIQTEEEQKLSPHRELLFFAHLPHGYAGLLFVSQI 170


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 139 YFVYKANYSNAVLYNSEVCQPLFFIEDIGMNAYYYY 246
           YFV K     A LY+S    P +F + I   A+  Y
Sbjct: 430 YFVRKGLIRVAPLYSSSSSSPYYFWKGINFRAFASY 465


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 21/80 (26%), Positives = 34/80 (42%)
 Frame = +3

Query: 318 YFYFYQQLLARYYFERLTNGLGKIPEFSWYSPIKTGYYPLMLTKFTPFAQRPDYYNLHTE 497
           Y++   + ++ YY      G+ + P     S I   + PL  T + P A    YYN    
Sbjct: 480 YYHKRHRQISPYYPTSSVYGVYESPPHMSDSRISRQHMPLTHTTYEPSA---PYYN---- 532

Query: 498 ENYEE*DSLTLMRRHSFSSF 557
            +YE  + +   R HSF  +
Sbjct: 533 -DYELAEEIERRRHHSFYDY 551


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 229 NAYYYYFHSIYRSGGHQKNTEPLKSVVERFTSTSTS 336
           +A Y Y+H       HQK    L+  VE++   S S
Sbjct: 379 DATYSYYHKDLEESVHQKLNSNLEKRVEKYIKHSCS 414


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 7   APYEVYPKMFMNMEVLQKIYVTKMQDGLINPEAAAKYGIHKEN 135
           A  + Y K+   ME +Q      +Q GL+N  + +   +H+ N
Sbjct: 615 AQIQAYNKLQSQMEHVQNSNEQHLQPGLLNKVSKSFDSVHRRN 657


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,192
Number of Sequences: 5004
Number of extensions: 42654
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)