Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0166
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0686 - 27249140-27249220,27249387-27249480,27249922-272499...    29   2.0  
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    28   4.6  
10_01_0158 + 1798370-1798381,1798472-1798840,1799031-1799564           28   4.6  
06_03_0522 - 21726317-21726634,21727202-21727654,21727771-217280...    28   4.6  
01_06_0846 + 32408333-32408484,32408560-32408926,32409021-324093...    28   6.1  
02_03_0199 + 16263549-16263644,16264941-16265899,16267140-162677...    27   8.1  

>04_04_0686 -
           27249140-27249220,27249387-27249480,27249922-27249987,
           27250068-27250158,27250378-27250460,27250565-27250633,
           27250971-27251038,27251118-27251204,27252998-27253069,
           27253469-27253527,27253663-27253780,27254411-27254466,
           27254892-27254937,27255011-27255052,27255837-27255922,
           27256039-27256087
          Length = 388

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/82 (21%), Positives = 38/82 (46%)
 Frame = +1

Query: 19  VYPKMFMNMEVLQKIYVTKMQDGLINPEAAAKYGIHKENDYFVYKANYSNAVLYNSEVCQ 198
           V P+ F+   VL  I +  ++  L+  +   K+G H E  Y +  A   + + Y++    
Sbjct: 68  VVPRSFIVRIVLGSIILMTLR--LLRVQVKRKFGHHAEAFYLILTATQFHLLFYSTRPLP 125

Query: 199 PLFFIEDIGMNAYYYYFHSIYR 264
            +  +  + +  YY++F   +R
Sbjct: 126 NVLALAFVNL-TYYFWFKGNHR 146


>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
            852330-852409,852506-852848,853068-853166,853240-853360,
            853567-853723,853976-854099,855275-855368,855866-857259,
            857882-857924,858240-858458,859379-859605,859701-859948,
            860246-860552,860725-861153
          Length = 1486

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 114  LSCGFRINEAILHLCYVNFLQHFHIHKHFRVYFIR 10
            L  GFR++ A+ +LC + +L+   I K  R   IR
Sbjct: 1002 LKAGFRLSSALFYLCNILWLRAVKIRKKLRRQGIR 1036


>10_01_0158 + 1798370-1798381,1798472-1798840,1799031-1799564
          Length = 304

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 127 KENDYF-VYKANYSNAVLYNSEVCQPLFFIEDI 222
           K+N  F VY+ + +NA+LY  E C P     DI
Sbjct: 117 KKNKLFLVYELDIANALLYLHEECHPYILHRDI 149


>06_03_0522 -
           21726317-21726634,21727202-21727654,21727771-21728025,
           21728109-21728249,21728404-21728565,21728660-21728820,
           21731598-21731733
          Length = 541

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 168 VRIIGFVNEVVVFLVNAILSCGFRINEAILHLC 70
           V I+G +N+  +FL   +LSC  R+ + I  +C
Sbjct: 350 VGILGIINQSFLFLAFFLLSCQERLYQEIREVC 382


>01_06_0846 +
           32408333-32408484,32408560-32408926,32409021-32409301,
           32409877-32409931,32410137-32410331,32410417-32410569
          Length = 400

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 274 HQKNTEPLKSVVERFTSTSTSNYWLVTTLSVLPMDLVRFPNSH 402
           H +NT P K  + +FT T TS+    T+    P+D V   + H
Sbjct: 158 HHRNTGPTKRWLLQFTYTGTSSQAAGTSSQGPPLDHVGTSSDH 200


>02_03_0199 +
           16263549-16263644,16264941-16265899,16267140-16267791,
           16267895-16267981,16268253-16268381,16269990-16270036,
           16271337-16271438,16272720-16272843,16272981-16273028,
           16273934-16274026,16274325-16274408,16274536-16274619,
           16274751-16274819,16275531-16275590,16275946-16276017,
           16276957-16277064,16278162-16278238,16278391-16278474,
           16278617-16278728,16278778-16278810,16278811-16278900,
           16279012-16279077,16279163-16279258,16279446-16279497,
           16279723-16279775,16279998-16280018
          Length = 1165

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 250 HSIYRSGGHQKNTEPLKSVVERFTSTSTSNY 342
           HS++     +K+T P  S++    STSTSN+
Sbjct: 137 HSLFHRSEKKKSTLPSCSIITDEASTSTSNH 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,509,338
Number of Sequences: 37544
Number of extensions: 243946
Number of successful extensions: 518
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)