Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0166
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44459| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_59295| Best HMM Match : SET (HMM E-Value=0)                         27   8.3  
SB_24423| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_44459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 151 KANYSNAVLYNSEVCQPLFFIEDIGMNAYYYYFHSIYRSGGHQKNTEPLKS 303
           + N  N +L  + V   L  +  + + AY  Y H ++    HQ+ T PL+S
Sbjct: 109 EVNTINEILLYASVAVSL--LNFVLLMAYACYHHGVFERLKHQRRTPPLRS 157


>SB_59295| Best HMM Match : SET (HMM E-Value=0)
          Length = 1230

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/71 (18%), Positives = 34/71 (47%)
 Frame = +1

Query: 25   PKMFMNMEVLQKIYVTKMQDGLINPEAAAKYGIHKENDYFVYKANYSNAVLYNSEVCQPL 204
            P++F + +  ++     ++D    P   + +G  +E+ Y +    Y N   Y +  C P 
Sbjct: 1111 PRLFRSTQPGKRPVSPAVEDSTKRPTTRSLFG--EEHCYVIDAKAYGNCGRYLNHSCSPN 1168

Query: 205  FFIEDIGMNAY 237
             F++++ ++ +
Sbjct: 1169 LFVQNVFIDTH 1179


>SB_24423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 536

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 288 GALKERRGEVYFYFYQQLLARYYFERLT 371
           G     RG+  FY Y   L RY+FE L+
Sbjct: 326 GGSSHIRGQGVFYIYGDSLNRYFFESLS 353


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,840,166
Number of Sequences: 59808
Number of extensions: 295552
Number of successful extensions: 673
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)