Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0166
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50027-6|CAO82026.1|  564|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF101318-9|AAC69349.1|  350|Caenorhabditis elegans Serpentine re...    28   4.1  
AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and bel...    28   4.1  
AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and bel...    28   4.1  
AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and bel...    28   4.1  
Z67995-2|CAA91944.2|  458|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z69634-1|CAA93450.2|  271|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AC199241-1|ABO33279.1|  343|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z81030-3|CAB02707.1|  138|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z50027-6|CAO82026.1|  564|Caenorhabditis elegans Hypothetical
           protein C39B10.2b protein.
          Length = 564

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 139 YFVYKANYSNAVLYNSEVCQPLFFIEDIGMNAYYYYFHSIY 261
           YF   AN+S   L   + C+ LF    +  N +Y++++ +Y
Sbjct: 517 YFQISANHSRHALKIDKSCRYLFPAAFLLWNVFYWWYYLVY 557


>AF101318-9|AAC69349.1|  350|Caenorhabditis elegans Serpentine
           receptor, class t protein56 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +1

Query: 82  DGLINPEAAAKYGIHKENDYFVYKANYSNAVLYNSEVCQPLF--FIEDIGM--NAYYYYF 249
           + LIN  A   + +     Y +Y + + + VL+NS+   PL     E  G+  +  + YF
Sbjct: 168 ESLINTNAMISFWLAFLTIYAIYGSLFFDTVLFNSDYMAPLLDPMTEQEGVTYSNNFLYF 227

Query: 250 HSI 258
           H+I
Sbjct: 228 HNI 230


>AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform c protein.
          Length = 660

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 88  LINPEAAAKYGIHKENDYFVYKANYSNAVLY 180
           +++P       IHKE   F YK+N   A+LY
Sbjct: 227 VLSPTRELAIQIHKEATKFSYKSNIQTAILY 257


>AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform b protein.
          Length = 644

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 88  LINPEAAAKYGIHKENDYFVYKANYSNAVLY 180
           +++P       IHKE   F YK+N   A+LY
Sbjct: 211 VLSPTRELAIQIHKEATKFSYKSNIQTAILY 241


>AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform a protein.
          Length = 641

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 88  LINPEAAAKYGIHKENDYFVYKANYSNAVLY 180
           +++P       IHKE   F YK+N   A+LY
Sbjct: 208 VLSPTRELAIQIHKEATKFSYKSNIQTAILY 238


>Z67995-2|CAA91944.2|  458|Caenorhabditis elegans Hypothetical
           protein M153.2 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 123 NAILSCGFRINEAILHLCYVNFLQHFHIHK 34
           +AI+ CG  ++  +  LCY+NF Q   + K
Sbjct: 295 DAIILCGTIVHLVVYALCYINFPQDSSLKK 324


>Z69634-1|CAA93450.2|  271|Caenorhabditis elegans Hypothetical
           protein B0001.1 protein.
          Length = 271

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 390 PEFSWYSPIKTGYYPLMLTKFTPFAQRPDYYNLHTEENYE 509
           P++S + P  +  Y L  + +T    RP  Y+  TE   E
Sbjct: 56  PQYSHFQPAGSKPYTLFKSVYTNSTNRPQEYSFKTERTTE 95


>AC199241-1|ABO33279.1|  343|Caenorhabditis elegans Hypothetical
           protein 2RSSE.1 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 256 IYRSGGHQKNTEPLKSVVERFTSTSTSNYWLVTTLSVLPMDLVRFPN 396
           I+R+ G+Q     L  V++     +  N+ + T  SV+   L + PN
Sbjct: 61  IWRAPGNQAQVRKLSQVMQHGRLVNIENFTVYTAASVIKKFLSKLPN 107


>Z81030-3|CAB02707.1|  138|Caenorhabditis elegans Hypothetical
           protein C01G10.5 protein.
          Length = 138

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +1

Query: 139 YFVYKANYSNAV---LYNSEVCQPLFFIEDIGMNAYYYYFHSIYRSGGHQKN 285
           Y+ Y  N    V   ++N +  + +++  D   N  YYY+ S   SGG+  N
Sbjct: 69  YYTYGKNCYLQVDLDIFNVKFARKIYYYPDGTYNNGYYYYPSNDNSGGYYYN 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,931,641
Number of Sequences: 27780
Number of extensions: 228566
Number of successful extensions: 571
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)