Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0166
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36305.1 68415.m04456 CAAX amino terminal protease family pro...    30   1.3  
At2g44370.1 68415.m05519 DC1 domain-containing protein highly si...    29   2.9  
At4g13620.1 68417.m02120 AP2 domain-containing transcription fac...    28   3.9  
At4g12560.1 68417.m01982 F-box family protein contains F-box dom...    28   3.9  
At3g08490.1 68416.m00984 hypothetical protein                          28   3.9  
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea...    28   5.1  

>At2g36305.1 68415.m04456 CAAX amino terminal protease family
           protein similar to CAAX prenyl protease 2 (EC 3.4.22.-)
           (Prenyl protein-specific endoprotease 2)
           (Farnesylated-proteins converting enzyme 2) (FACE-2)
           from Mus musculus [SP|P57791], Homo sapiens [SP|Q9Y256],
           Drosophila melanogaster [SP|Q9U1H8]; contains Pfam
           profile PF02517 CAAX amino terminal protease family
           protein
          Length = 242

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = -3

Query: 150 VNEVVVF---LVNAILSCGFRINEAILHLCYVNF-LQHFHIHKHFRVYFIR 10
           V E +VF   ++  +L  GFRIN AI  LC V F L H +   HFR  +IR
Sbjct: 93  VTEELVFRSCMIPLLLCAGFRINTAIF-LCPVLFSLAHLN---HFREMYIR 139


>At2g44370.1 68415.m05519 DC1 domain-containing protein highly
           similar to GP|2435515|AF024504
          Length = 250

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 97  PEAAAKYGIHKENDYFVYKANYSNAVLYNSEVCQPLFFIEDIGMNAYYYY 246
           PE+  + G H      +Y++ Y N +++N +VCQ     E +  N + YY
Sbjct: 117 PESVEREG-HAHPLTLLYRSPYQNGLIFNCDVCQ-----ETVPDNLWSYY 160


>At4g13620.1 68417.m02120 AP2 domain-containing transcription
           factor, putative similar to AP2 domain containing
           protein RAP2.4 [Arabidopsis thaliana] GI:2281633;
           contains Pfam profile PF00847: AP2 domain
          Length = 388

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 226 MNAYYYYF-HSIYRSGGHQKNTEPLKSVVERFTSTSTSNYWLVTT 357
           M+ Y+ Y  +S Y+S  ++     +   +  + S    NYWL TT
Sbjct: 166 MSPYHKYIPNSFYQSDQNRNEWVEINKTLTNYPSKGFGNYWLSTT 210


>At4g12560.1 68417.m01982 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 413

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +1

Query: 235 YYYYFHSIYRSGGHQKNTEPLKSVVERFTSTSTSNYWLVTTLSVLPMDLVRFPNS 399
           +Y+Y+H +YR G        L  V+ R       N  +   L++   ++VRFP +
Sbjct: 199 FYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEA 253


>At3g08490.1 68416.m00984 hypothetical protein
          Length = 271

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = +3

Query: 354 YFERLTNGLGKIPEFSWYSPIKTGYYPLMLTKFTPFAQRPDYYNLHTEEN--YEE*DSLT 527
           YF +  + +   PE  + SPI++   PL+L+    F +  D+   ++E N  YE+ +   
Sbjct: 11  YFVQSPSTVFHDPESEFQSPIRSDSAPLVLSSVNEFPRYSDFLR-NSENNFLYEDDEKRL 69

Query: 528 LMRRHSFSSFKVVL 569
           +    S SS+ +VL
Sbjct: 70  VPLGTSNSSWWIVL 83


>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
            family protein similar to WD-repeat protein mip1
            (SP:P87141) [Schizosaccharomyces pombe]
          Length = 1354

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 372  NGLGKIPEFSWYSPIKTGYYPLMLTKFTPFAQRPDYYNLHTEENYEE 512
            +GL  IP  +W +  +TG    +L  F+P     D        NYEE
Sbjct: 1004 SGLSNIPIANWDTKFETGTKTALLHPFSPIVVAADENERIRVWNYEE 1050


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,160,563
Number of Sequences: 28952
Number of extensions: 208199
Number of successful extensions: 519
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)