Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0162
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...   135   6e-33
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    28   1.3  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   3.0  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    27   3.0  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   3.9  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    26   5.2  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   5.2  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   6.9  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   6.9  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   9.1  

>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score =  135 bits (327), Expect = 6e-33
 Identities = 58/90 (64%), Positives = 71/90 (78%)
 Frame = -1

Query: 759 MESNGKYVTRSGAEVEYSTGPIVWGEPGTNGQHAFYQLIHQGTRLIPCDFIAPAQTHNPI 580
           MESNGK +TRSG  V Y+TG I+WGEPGTN QH+F+QLIHQGT+LIP DF+ P ++HNPI
Sbjct: 362 MESNGKAITRSGDMVNYTTGKILWGEPGTNSQHSFFQLIHQGTKLIPADFLIPIESHNPI 421

Query: 579 SNGVHHKILLANFLAQTEALMKGKQLTRLK 490
            N  HH++L +NF AQTEALM GK    +K
Sbjct: 422 DNNKHHRMLFSNFAAQTEALMLGKTPAEVK 451



 Score =  101 bits (242), Expect = 1e-22
 Identities = 44/64 (68%), Positives = 55/64 (85%)
 Frame = -3

Query: 451 DKILPHKVFKGNRPTNSIVLKKITPFTLGALIAMYEHKIFTQGVIWDINSYDQWGVELGK 272
           D+I+PHK F GNRP+NSI+ KKITP +LGALIA YE   FT+G +W+INS+DQ+GVELGK
Sbjct: 457 DEIVPHKTFVGNRPSNSIIAKKITPASLGALIAFYEWVTFTEGAVWNINSFDQFGVELGK 516

Query: 271 QLAK 260
           +LAK
Sbjct: 517 KLAK 520



 Score = 31.1 bits (67), Expect = 0.18
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 248 ELQGTAAVTGHDASTNGLINFLKKNF 171
           +L+    V  HD+STNGLIN  K  F
Sbjct: 525 QLETKGDVENHDSSTNGLINLFKNGF 550


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 186 EVNESIRGSVVAGHS--CSPLQLRLIALANCLPSSTP 290
           +VN  I   V  G S   SP   RL+A  NC PSSTP
Sbjct: 36  DVNAPISPVVDEGKSELVSPTLERLVAPFNCSPSSTP 72


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 222 GHSCSPLQLRLIALANCLPSSTPH*SYELISQITPCVKIL 341
           GH   P+ + + AL      S PH     I + T CVK L
Sbjct: 88  GHPSPPVHIYMSALIKVCKKSKPHLQTHCIKRKTYCVKHL 127


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +3

Query: 426 NTLCGRILSIASGAIPDFSSSALASSAVCPSS 521
           +++   +  ++S A+ D ++SA ASS+V P+S
Sbjct: 99  SSVAASVTPVSSSAVVDSATSAAASSSVIPTS 130


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 385 ITPFTLGALIAMYEHKIFTQGVIWDINSYD 296
           +T  TLG LI M  H   T GV +++N Y+
Sbjct: 179 LTVATLGDLIGMVGHLNDTSGVDFNLNEYN 208


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 297 SYELISQITPCVKILCSYMAISAPKVNGVIFFRTIEFVG 413
           +Y L+++  PC    C++  IS P V+    F   EFVG
Sbjct: 277 TYNLLNKDKPCSMDPCNFDGISIPPVD----FANTEFVG 311


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 508 TADEAKAELEKSGMAPEAIDKI 443
           T +EA   LEKSG+AP+ + +I
Sbjct: 29  TGEEAVPFLEKSGLAPQVLGQI 50


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = -3

Query: 679 RDQRTARLLPAHTPGNQIDSMRFHRSSPNSQSNFEWCSPQDPSS*FLGSNRSPDEG---- 512
           RD R+ R   +  PG      R  R SP+++ N    +  +       S R  +E     
Sbjct: 194 RDHRSRRRSRSRRPGRSRSRRRSRRPSPSAEHNSAEENDPELQRVIEESKRQAEEDAKRR 253

Query: 511 QTADEAKAELEKS 473
             A++++AEL+K+
Sbjct: 254 NMANDSEAELQKA 266


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 598 PNSQSNFEWCSPQDPSS*FLGSNRSPDEGQTADEAKAELEKSGMAP 461
           P  QS+    S   P+S +  +  +P+E  + D   A L+ +G+ P
Sbjct: 328 PGPQSHKYSLSSGPPASLYNANALTPEESSSIDSLFANLQAAGLVP 373


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1112

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 658  LLPAHTPGNQIDSMRFHRSSPNSQSNFEWCSP 563
            +LP+  P   +D    H +  +S+ +F+W  P
Sbjct: 911  ILPSEFPNPLVDEAYLHPAVDDSKQSFQWGIP 942


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,313
Number of Sequences: 5004
Number of extensions: 71131
Number of successful extensions: 216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)