Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0162
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37337| Best HMM Match : PGI (HMM E-Value=0)                         78   7e-15
SB_40825| Best HMM Match : fn3 (HMM E-Value=0.078)                     33   0.34 
SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)                    33   0.34 
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                30   1.8  
SB_12784| Best HMM Match : ADAM_spacer1 (HMM E-Value=1.4e-23)          29   3.1  
SB_42106| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   5.5  
SB_4127| Best HMM Match : TFIIF_beta (HMM E-Value=4.4)                 29   5.5  
SB_39600| Best HMM Match : Sushi (HMM E-Value=0)                       29   5.5  
SB_9147| Best HMM Match : Sushi (HMM E-Value=0)                        29   5.5  
SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)                   28   7.3  

>SB_37337| Best HMM Match : PGI (HMM E-Value=0)
          Length = 391

 Score = 78.2 bits (184), Expect = 7e-15
 Identities = 33/44 (75%), Positives = 40/44 (90%)
 Frame = -1

Query: 633 TRLIPCDFIAPAQTHNPISNGVHHKILLANFLAQTEALMKGKQL 502
           T++IP DF+AP +THNPISNG+HH+ILL+NFLAQ EALMKGK L
Sbjct: 280 TKMIPADFLAPIETHNPISNGLHHQILLSNFLAQPEALMKGKTL 323



 Score = 32.3 bits (70), Expect = 0.45
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 544 FLGSNRSPDEGQTADEAKAELEKSGMAPEAIDKILPHK 431
           FL    +  +G+T +EA+ EL   G   E +DKI P K
Sbjct: 310 FLAQPEALMKGKTLEEARTELAAEGKTGEKLDKIAPQK 347


>SB_40825| Best HMM Match : fn3 (HMM E-Value=0.078)
          Length = 432

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 744 KYVTRSGAEVEYSTGPIVWGEP-GTNGQHAFYQLIHQGTRLIPCDFIAPAQTH 589
           KYVT    + E +T  I W +P   NG    Y++ +  TR +P   + P  TH
Sbjct: 93  KYVTAKVVQPESATIKITWSQPKHPNGVITGYKVCNNFTRGVPTQQLYPGGTH 145


>SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)
          Length = 514

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 744 KYVTRSGAEVEYSTGPIVWGEP-GTNGQHAFYQLIHQGTRLIPCDFIAPAQTH 589
           KYVT    + E +T  I W +P   NG    Y++ +  TR +P   + P  TH
Sbjct: 220 KYVTAKVVQPESATIKITWSQPKHPNGVITGYKVCNNFTRGVPTQQLYPGGTH 272


>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 700 AHRVGRARDQRTARLLPAHTPGNQIDSMRFHRSSP 596
           + R+   RDQ+T RLLP  TP  +I    F +  P
Sbjct: 214 SERLDDGRDQKTMRLLPRGTPRGRILQKSFAKEEP 248


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 436  HKVFKGNRPTNSIVLKKITPFTLGALIAMYEHK 338
            HK+F GNR +N+IV    +P   G  + +Y  +
Sbjct: 1550 HKLFNGNRDSNTIVENVFSPAIRGRYVRVYPRR 1582



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -3

Query: 433 KVFKGNRPTNSIVLKKITPFTLGALIAMYEHKIFTQGVIWDINSYDQWGVELGKQLAKAM 254
           K+F+GN+  NS+V   + P   G  +  Y    F   +   +  Y Q  V   K  A+A+
Sbjct: 773 KIFRGNKDRNSVVKHPLVPAIRGRYVRFYPKSWFAH-ISMRVELYGQRTVP--KPKARAL 829

Query: 253 SLSCR 239
            +  R
Sbjct: 830 GVQSR 834



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = -3

Query: 433  KVFKGNRPTNSIVLKKITPFTLGALIAMYEHKIFTQGVIWDINSYDQWGVELGKQL 266
            KVF+GNR  N+IV  K     L   + ++ H    +G I      + +G+ LGKQ+
Sbjct: 1399 KVFRGNRDKNTIVKNKFRRALLCRYVRIHPHT--WRGTI--ALRAELYGIRLGKQV 1450


>SB_12784| Best HMM Match : ADAM_spacer1 (HMM E-Value=1.4e-23)
          Length = 571

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 443 PSAQGIQRKPAYKLYCSEEDHSIHFR 366
           P  QG++ +   KLYC  E   IHF+
Sbjct: 327 PKYQGVREEDRCKLYCQVESKRIHFK 352


>SB_42106| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 929

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 433 KVFKGNRPTNSIVLKKITPFTLGALIAMYEH 341
           K FKGNR  NS+V+ ++ P     +I +Y +
Sbjct: 881 KYFKGNRDQNSVVMHRLFPRIRCRVIRLYPY 911


>SB_4127| Best HMM Match : TFIIF_beta (HMM E-Value=4.4)
          Length = 333

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 323 TLREDLVFVHGNKCS*SEWSDLLQNNRVCRPVSFEYLVRKDLVYCLRSHTR 475
           TL+   +F+HG KC     S+L + ++ C  +  E + R+  +  LR  +R
Sbjct: 100 TLQHGSLFMHGTKC-----SNLKKEDKTCEVMKAEDIERRQKLMLLRQSSR 145


>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1368

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 433  KVFKGNRPTNSIVLKKITPFTLGALIAMYEHK 338
            KVF+GN   N++V  ++ P  +   + +Y H+
Sbjct: 1149 KVFRGNENRNTVVKHELKPTIIAQKVRIYRHQ 1180


>SB_9147| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1656

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 433  KVFKGNRPTNSIVLKKITPFTLGALIAMYEHK 338
            KVF+GN   N++V  ++ P  +   + +Y H+
Sbjct: 1462 KVFRGNENRNTVVRHELKPTIIAQKVRIYRHQ 1493


>SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)
          Length = 1065

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 257 NEPELQGTAAVTGHDASTNG 198
           NEP + G AA+TG+  + NG
Sbjct: 839 NEPRIYGLAAITGYQVNLNG 858


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,536,147
Number of Sequences: 59808
Number of extensions: 559290
Number of successful extensions: 1668
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1668
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)