Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0162
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110500-9|CAE54920.1| 586|Caenorhabditis elegans Hypothetical ... 163 1e-40
AL110500-8|CAB60430.1| 551|Caenorhabditis elegans Hypothetical ... 163 1e-40
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un... 31 0.69
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un... 31 0.69
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein. 31 0.69
U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical pr... 29 3.7
>AL110500-9|CAE54920.1| 586|Caenorhabditis elegans Hypothetical
protein Y87G2A.8b protein.
Length = 586
Score = 163 bits (396), Expect = 1e-40
Identities = 73/86 (84%), Positives = 78/86 (90%)
Frame = -1
Query: 765 GDMESNGKYVTRSGAEVEYSTGPIVWGEPGTNGQHAFYQLIHQGTRLIPCDFIAPAQTHN 586
GDMESNGK+VTR G V+YSTGPIVWGEPGTNGQHAFYQLIHQGTRLIP DFIAP +T N
Sbjct: 388 GDMESNGKFVTRHGQRVDYSTGPIVWGEPGTNGQHAFYQLIHQGTRLIPADFIAPVKTLN 447
Query: 585 PISNGVHHKILLANFLAQTEALMKGK 508
PI G+HH+ILLANFLAQTEALMKGK
Sbjct: 448 PIRGGLHHQILLANFLAQTEALMKGK 473
Score = 147 bits (356), Expect = 9e-36
Identities = 68/97 (70%), Positives = 80/97 (82%)
Frame = -3
Query: 544 FLGSNRSPDEGQTADEAKAELEKSGMAPEAIDKILPHKVFKGNRPTNSIVLKKITPFTLG 365
FL + +G+TA A+AEL+ SGM+PE+I KILPHKVF+GN+PT SIVL +TPFTLG
Sbjct: 462 FLAQTEALMKGKTAAVAEAELKSSGMSPESIAKILPHKVFEGNKPTTSIVLPVVTPFTLG 521
Query: 364 ALIAMYEHKIFTQGVIWDINSYDQWGVELGKQLAKAM 254
ALIA YEHKIF QG+IWDI SYDQWGVELGKQLAK +
Sbjct: 522 ALIAFYEHKIFVQGIIWDICSYDQWGVELGKQLAKVI 558
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = -2
Query: 254 EPELQGTAAVTGHDASTNGLINFLKKN 174
+PEL VT HDASTNGLI F+K N
Sbjct: 559 QPELASADTVTSHDASTNGLIAFIKNN 585
>AL110500-8|CAB60430.1| 551|Caenorhabditis elegans Hypothetical
protein Y87G2A.8a protein.
Length = 551
Score = 163 bits (396), Expect = 1e-40
Identities = 73/86 (84%), Positives = 78/86 (90%)
Frame = -1
Query: 765 GDMESNGKYVTRSGAEVEYSTGPIVWGEPGTNGQHAFYQLIHQGTRLIPCDFIAPAQTHN 586
GDMESNGK+VTR G V+YSTGPIVWGEPGTNGQHAFYQLIHQGTRLIP DFIAP +T N
Sbjct: 353 GDMESNGKFVTRHGQRVDYSTGPIVWGEPGTNGQHAFYQLIHQGTRLIPADFIAPVKTLN 412
Query: 585 PISNGVHHKILLANFLAQTEALMKGK 508
PI G+HH+ILLANFLAQTEALMKGK
Sbjct: 413 PIRGGLHHQILLANFLAQTEALMKGK 438
Score = 147 bits (356), Expect = 9e-36
Identities = 68/97 (70%), Positives = 80/97 (82%)
Frame = -3
Query: 544 FLGSNRSPDEGQTADEAKAELEKSGMAPEAIDKILPHKVFKGNRPTNSIVLKKITPFTLG 365
FL + +G+TA A+AEL+ SGM+PE+I KILPHKVF+GN+PT SIVL +TPFTLG
Sbjct: 427 FLAQTEALMKGKTAAVAEAELKSSGMSPESIAKILPHKVFEGNKPTTSIVLPVVTPFTLG 486
Query: 364 ALIAMYEHKIFTQGVIWDINSYDQWGVELGKQLAKAM 254
ALIA YEHKIF QG+IWDI SYDQWGVELGKQLAK +
Sbjct: 487 ALIAFYEHKIFVQGIIWDICSYDQWGVELGKQLAKVI 523
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = -2
Query: 254 EPELQGTAAVTGHDASTNGLINFLKKN 174
+PEL VT HDASTNGLI F+K N
Sbjct: 524 QPELASADTVTSHDASTNGLIAFIKNN 550
>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform a protein.
Length = 1837
Score = 31.5 bits (68), Expect = 0.69
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -1
Query: 696 IVWGEPGTNGQHAFYQLIHQGTRLIPCDF-IAPAQTHNPISNGVHHKILLANFLAQTEAL 520
+V+ PG H FYQL + D + P ++++ ++ G +I + A EAL
Sbjct: 295 LVFQAPGERNYHIFYQLCAARNHQVLKDLHLGPCESYSYLTQGGDSRIPGVDDKADFEAL 354
Query: 519 MKGKQL 502
+K QL
Sbjct: 355 LKALQL 360
>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform b protein.
Length = 1839
Score = 31.5 bits (68), Expect = 0.69
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -1
Query: 696 IVWGEPGTNGQHAFYQLIHQGTRLIPCDF-IAPAQTHNPISNGVHHKILLANFLAQTEAL 520
+V+ PG H FYQL + D + P ++++ ++ G +I + A EAL
Sbjct: 295 LVFQAPGERNYHIFYQLCAARNHQVLKDLHLGPCESYSYLTQGGDSRIPGVDDKADFEAL 354
Query: 519 MKGKQL 502
+K QL
Sbjct: 355 LKALQL 360
>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
Length = 1839
Score = 31.5 bits (68), Expect = 0.69
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -1
Query: 696 IVWGEPGTNGQHAFYQLIHQGTRLIPCDF-IAPAQTHNPISNGVHHKILLANFLAQTEAL 520
+V+ PG H FYQL + D + P ++++ ++ G +I + A EAL
Sbjct: 295 LVFQAPGERNYHIFYQLCAARNHQVLKDLHLGPCESYSYLTQGGDSRIPGVDDKADFEAL 354
Query: 519 MKGKQL 502
+K QL
Sbjct: 355 LKALQL 360
>U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical
protein T02G5.7 protein.
Length = 390
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -3
Query: 496 AKAELEKSGMAPEAIDKILPHKVFK---GNRPTNSIVLKKITPFTLGAL 359
AKA +E+SG+APE I++++ V G T I L P T A+
Sbjct: 36 AKAAIERSGVAPEKIEEVIGGCVLPAGLGQNVTRQISLSAGLPVTTQAV 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,733,764
Number of Sequences: 27780
Number of extensions: 408924
Number of successful extensions: 1135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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