Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0162
         (771 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42740.1 68418.m05205 glucose-6-phosphate isomerase, cytosoli...    91   7e-19
At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative...    49   4e-06
At1g18310.1 68414.m02288 glycosyl hydrolase family 81 protein si...    30   1.5  
At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containi...    29   2.6  
At4g33580.1 68417.m04771 carbonic anhydrase family protein / car...    28   5.9  
At2g01130.1 68415.m00021 helicase domain-containing protein simi...    28   5.9  
At4g16070.1 68417.m02437 lipase class 3 family protein low simil...    28   7.9  

>At5g42740.1 68418.m05205 glucose-6-phosphate isomerase, cytosolic
           (PGIC) identical to SP|P34795 Glucose-6-phosphate
           isomerase, cytosolic (EC 5.3.1.9) (GPI) (Phosphoglucose
           isomerase) (PGI) (Phosphohexose isomerase) (PHI)
           {Arabidopsis thaliana}; contains Pfam profile PF00342:
           glucose-6-phosphate isomerase
          Length = 560

 Score = 91.1 bits (216), Expect = 7e-19
 Identities = 48/94 (51%), Positives = 63/94 (67%), Gaps = 4/94 (4%)
 Frame = -1

Query: 759 MESNGKYVTRSGAEVEYSTGPIVWGEPGTNGQHAFYQLIHQGTRLIPCDFIAPAQTHNPI 580
           MESNGK V+  G  + + TG I +GEPGTNGQH+FYQLIHQG R+IPCDFI   ++  P+
Sbjct: 360 MESNGKGVSIDGLPLPFETGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGIVKSQQPV 418

Query: 579 -SNG---VHHKILLANFLAQTEALMKGKQLTRLK 490
              G    +H  L++NF AQ +AL  GK   +L+
Sbjct: 419 YLKGEVVSNHDELMSNFFAQPDALAYGKTPEQLQ 452



 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 34/63 (53%), Positives = 50/63 (79%)
 Frame = -3

Query: 451 DKILPHKVFKGNRPTNSIVLKKITPFTLGALIAMYEHKIFTQGVIWDINSYDQWGVELGK 272
           + ++PHK F GNRP+ S++L ++T + +G L+A+YEH++  QG +W INS+DQWGVELGK
Sbjct: 458 ENLIPHKTFSGNRPSLSLLLPELTAYNVGQLLAIYEHRVAVQGFVWGINSFDQWGVELGK 517

Query: 271 QLA 263
            LA
Sbjct: 518 VLA 520


>At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative
           similar to glucose-6-phosphate isomerase [Spinacia
           oleracea] GI:3413511; contains Pfam profile PF00342:
           glucose-6-phosphate isomerase
          Length = 613

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
 Frame = -3

Query: 430 VFKGNRPTNSIVLKKITPFTLGALIAMYEHKIFTQGVIWDINSYDQWGVELGKQ-LAKAM 254
           ++   R + S+ ++++TP ++GA+IA+YE  +     I +IN+Y Q GVE GK+  A+ +
Sbjct: 474 LYANGRESISVTIQEVTPTSVGAIIALYERAVGLYASIVNINAYHQPGVEAGKKAAAEVL 533

Query: 253 SLSCRGLQ-L*PATTLPRMDSLT 188
           +L  R L  L  AT    ++ LT
Sbjct: 534 ALQKRVLSVLNEATCKDPVEPLT 556



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = -1

Query: 759 MESNGKYVTRSGAEVEYSTGPIVWGEPGTNGQHAFYQLIHQGTRLIPCDFIAPAQTHNP 583
           MES GK     G  V  + G  V+G  G+  QHA+ Q +  G       FI   +   P
Sbjct: 391 MESLGKEFDLDGNTV--NQGLTVYGNKGSTDQHAYIQQLRDGVHNFFATFIEVLRDRPP 447


>At1g18310.1 68414.m02288 glycosyl hydrolase family 81 protein
           similar to beta-glucan binding protein GI:6625560 from
           [Phaseolus vulgaris]
          Length = 649

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 287 SPLIV*IDIPDHTLREDLVFVHGNKCS*SEWSDLLQNNR 403
           S L+V +D P   LR     V G+  S ++WSD L NN+
Sbjct: 110 SDLVVTLDFPSSNLR--FFLVRGSPSSSTKWSDKLTNNQ 146


>At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 836

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +1

Query: 592 SLGWSDEIAW-NQSGSLVYELVEGVLSVGPGLAPH 693
           S GW++E+ + ++SGS+++   +G+ SV PGL  H
Sbjct: 94  SSGWTEEVEYLDESGSVLHS-GKGIRSVEPGLDDH 127


>At4g33580.1 68417.m04771 carbonic anhydrase family protein /
           carbonate dehydratase family protein similar to
           SP|P46512 Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonate
           dehydratase 1) {Flaveria linearis}; contains Pfam
           profile PF00484: Carbonic anhydrase
          Length = 301

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 450 SIASGAIPDFSSSALASSAVCPSSGLRFEP 539
           ++A    P F   A A S VCPS+ L F+P
Sbjct: 106 NLADAQAPKFLVIACADSRVCPSAVLGFQP 135


>At2g01130.1 68415.m00021 helicase domain-containing protein similar
           to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
           GI:5881579; contains Pfam profiles PF04408: Helicase
           associated domain (HA2), PF00271: Helicase conserved
           C-terminal domain
          Length = 1112

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 414 RFPLNTLCGRILSIASGAIPDFSSSALAS 500
           R PL++LC +I S+  G+I +F S AL S
Sbjct: 643 RTPLHSLCLQIKSLNLGSISEFLSRALQS 671


>At4g16070.1 68417.m02437 lipase class 3 family protein low
           similarity to calmodulin-binding heat-shock protein
           CaMBP [Nicotiana tabacum] GI:1087073; contains Pfam
           profile PF01764: Lipase, PF03893: Lipase 3 N-terminal
           region
          Length = 654

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -3

Query: 367 GALIAMYEHKIFTQGVIWDINSYDQWGVELGKQLAKAMSLSCRGLQL*PATTLPRMDSLT 188
           GA++ +Y   + ++ ++W  N  D  G ELGK          R     PAT L  + +L+
Sbjct: 11  GAVVILY---LLSRRIVWARNGEDDSGGELGKSGRSGRRRIVRRPAQAPATWLETISTLS 67

Query: 187 SSRR 176
            + R
Sbjct: 68  ETLR 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,900,201
Number of Sequences: 28952
Number of extensions: 389030
Number of successful extensions: 1003
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)