Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0160
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.53 
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.8  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    27   2.8  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    26   4.9  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   6.5  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.6  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    25   8.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.6  

>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 116 ARKIRGRPENAGPDPVRNVRRFSRV 42
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 180 RSAQNWHGQGESDCLIKTKHCDGPRGVDA 266
           R   N  G+ ++DCLI    C   +G+D+
Sbjct: 25  RGTLNSKGKNDNDCLIMCMRCRKVKGIDS 53


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = +3

Query: 27  IYLI*HSRKSSYVSDWIRTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQNWHGQ 206
           +YL      S Y +D  RTR++ PSA + +    ++       R   T V  S +   G+
Sbjct: 136 VYLTTLYLDSPYTTDLQRTRLILPSAKIDTYTTYNIDGAELPNRVGNTLVYESRETITGE 195

Query: 207 GE--SDCLIKTKH-CDGPRGVD 263
                +  ++ +H    PRG D
Sbjct: 196 DNDLGEIYVRYEHTVPIPRGAD 217


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -3

Query: 557 TISHLCYTSHVSLQCQIESSST 492
           T+S + +  HV ++C+++S S+
Sbjct: 912 TLSEMAFAGHVGIECELDSLSS 933


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 362 GYLKRVIVTPAVYPRLLEFLHVDIQST 282
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 356  LKRVIVTPAVYPRLLEFLHVDIQSTGQKSHC 264
            L + IVT + + RLLE+L  D  S  Q S C
Sbjct: 1789 LTKRIVTLSDHYRLLEYLLKDESSCSQASQC 1819


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -3

Query: 200 VPVLS*PLNGGRTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFS 48
           VP+   PL+   T+     T   RH  T  + +    N GPD + +   +S
Sbjct: 211 VPIFRIPLSDYETDDMDDGTPLQRHVATLNQYQSPIFNLGPDILEDEPSYS 261


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +2

Query: 377 LISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSLTLSGIVRRHERCSISGRS 556
           L S AH+ ++++P VP  +   P P+  + E   G    +    S  VR H+    +G  
Sbjct: 749 LASLAHDDLDDLPAVPRIFSPPPLPKTPSGE--FGDNEFMFPKKSNRVRGHQSRPSTGSQ 806

Query: 557 FR 562
            R
Sbjct: 807 LR 808


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,456
Number of Sequences: 5004
Number of extensions: 49933
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)