Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0160
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    34   0.10 
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    30   1.6  
02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580     29   2.9  
12_02_0077 - 13288916-13289659,13289689-13289691                       28   6.6  
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18...    27   8.7  

>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +2

Query: 356  GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSLTLSGIVRRHER 535
            G+  PR +  D  EW N  PT+   ++ + +PRE     Q+ K  +       I+   E 
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIF------ILNSDES 1446

Query: 536  CSISGR 553
            CS+ G+
Sbjct: 1447 CSLKGK 1452


>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 380 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 279
           LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580
          Length = 726

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -1

Query: 310 NFFTLTFRALGRNHIASTPRGPSQCFVLIRQSDSPCPC 197
           NF     R L + HIAS   GP +C   +      C C
Sbjct: 225 NFLPSCVRCLDKGHIASNCSGPVRCHSCLEAGHMSCFC 262


>12_02_0077 - 13288916-13289659,13289689-13289691
          Length = 248

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 506 ESSSTGSSFPADSPKPVPLAVVSLDSR 426
           ++ S G S P DS + VP+ VV+L  R
Sbjct: 3   DNQSLGKSLPKDSRRHVPVGVVALKKR 29


>08_01_0025 -
           184899-185384,185707-185940,187156-187341,188108-188158
          Length = 318

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 225 LDSRIPLVRASSELTVERRSYRIVPIAHETKPTRP 121
           LD+ IP+ R   E + E R   I+P  +   P+ P
Sbjct: 274 LDNEIPITRTKIESSSEVRDLEILPTGNAALPSSP 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,202,791
Number of Sequences: 37544
Number of extensions: 369666
Number of successful extensions: 1056
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)