Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0160
(607 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5) 47 1e-05
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35) 40 0.002
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.55
SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_36990| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_10727| Best HMM Match : Drf_FH1 (HMM E-Value=3.8) 28 6.7
SB_10504| Best HMM Match : MBOAT (HMM E-Value=0.16) 28 6.7
>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = -3
Query: 512 QIESSSTGSSFPADSPKPVPLAVVSLDSR 426
++ESSSTGSSFPAD KPVPLAVVSLDSR
Sbjct: 102 RLESSSTGSSFPADCAKPVPLAVVSLDSR 130
>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +2
Query: 365 MPRHLISDAHEWINEIPTVPIYYLAKP 445
MPRHLISDAHEWINEIPTVPI +P
Sbjct: 1 MPRHLISDAHEWINEIPTVPIIEFLQP 27
>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
Length = 167
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +3
Query: 282 SALNVNVKKFKQARVNGGSNYDSL 353
+ALNV VKKF QARVNGGSNYDSL
Sbjct: 28 AALNVKVKKFNQARVNGGSNYDSL 51
>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +3
Query: 285 ALNVNVKKFKQARVNGGSNYDSL 353
ALNV VKKF QARVNG SNYDSL
Sbjct: 2 ALNVKVKKFNQARVNGWSNYDSL 24
>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
Length = 521
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = -1
Query: 247 PSQCFVLIRQSDSPCPCQF 191
PSQCFVLI+QSDSP CQF
Sbjct: 64 PSQCFVLIKQSDSPSHCQF 82
Score = 32.7 bits (71), Expect = 0.24
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = -2
Query: 294 HSEHWAEITLRQHR 253
++EHWAEITLRQHR
Sbjct: 48 NNEHWAEITLRQHR 61
>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +3
Query: 279 PSALNVNVKKFKQARVNGGSNYDS 350
PSALNV VKKF QARVNGG +S
Sbjct: 31 PSALNVKVKKFNQARVNGGDPLES 54
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 186 LTVERRSYRIVPIAHETKPTRPYG*EDPRKA-GERGSGSSPKRKT 55
L+V R Y++VP++HE + R A +GSGSSP R T
Sbjct: 1038 LSVSGRCYKVVPLSHELCLVSKSLWNNRRSADNPKGSGSSPTRDT 1082
>SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/75 (24%), Positives = 30/75 (40%)
Frame = +3
Query: 147 RSARFCTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGVDAM*FLPSALNVNVKKFKQARV 326
R C +A + S N + DC + TK+ G + M P+ + K + +
Sbjct: 232 RRFNLCRSATKSSYVNLDSRTNEDCQVHTKYICKDTGAELM---PTDIKFYQKFGGEKSI 288
Query: 327 NGGSNYDSLKVAKCL 371
G + S + KCL
Sbjct: 289 TGSTTLFSALLTKCL 303
>SB_36990| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 163 QNRADRARNETDTTLRLGRSAEGRRTRVR 77
+NRA RA + L+ R EGRRTR R
Sbjct: 52 ENRALRAHRKCGIILQAFRKFEGRRTRTR 80
>SB_10727| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
Length = 215
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 584 VSLLTRLGETISHLCYTSHVSLQCQIESSSTGSSF-PADSPKPVPLA 447
+ + TR+ E S L SH L + S+S+ SSF P P PVP +
Sbjct: 87 LEIATRIHERPSML--HSHTPLFPPVRSASSASSFEPVSPPPPVPFS 131
>SB_10504| Best HMM Match : MBOAT (HMM E-Value=0.16)
Length = 465
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 267 LRQHREGHRNALF*LDSRIPLVRASSELTVERR 169
LR+ RE ++ +F L+SR+ A ELT E+R
Sbjct: 75 LREIREESKSEVFELNSRLNATPAGFELTAEKR 107
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,566,991
Number of Sequences: 59808
Number of extensions: 417375
Number of successful extensions: 1079
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -