Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0160
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    30   1.0  
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    30   1.4  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    28   4.2  
At5g22740.1 68418.m02656 glycosyl transferase family 2 protein s...    28   5.5  
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    27   7.3  
At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family p...    27   9.6  
At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family p...    27   9.6  

>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 78  RTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQN 194
           R+RVLRPS  + + + +S  FR  S     T   R A N
Sbjct: 37  RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75


>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 61  TFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFNGQLRT 195
           T+ T SG       R++L+      R+  D HD +  PFNG   T
Sbjct: 179 TYVTQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHT 222


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 85  RVRIQSET*DDFRECHIKYIQFLRPH 8
           R+RIQ     DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197


>At5g22740.1 68418.m02656 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 534

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +1

Query: 13  ASKTVYI*YDTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPF 177
           ASK + I Y  RENR+ ++ G+     GL R +  V+ C +  + D      P F
Sbjct: 154 ASKGINIRYQIRENRVGYKAGA--LKEGLKRSY--VKHCEYVVIFDADFQPEPDF 204


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 356 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKK 487
           G  +P + +SD +  INE+   P   +AK   +E   +   GK+
Sbjct: 70  GGGLPNNGVSDTNSQINEVTVTP-QVIAKETVKENGLQKNGGKR 112


>At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 367 HLATLRES*LLPPFTRACLNFFTLTFRALGRNH 269
           HLAT+  + L  P  +A  N F   FRA+ RN+
Sbjct: 174 HLATILHASLRTPNLKARFNTFREEFRAVWRNY 206


>At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 367 HLATLRES*LLPPFTRACLNFFTLTFRALGRNH 269
           HLAT+  + L  P  +A  N F   FRA+ RN+
Sbjct: 174 HLATILHASLRTPNLKARFNTFREEFRAVWRNY 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,462,434
Number of Sequences: 28952
Number of extensions: 279087
Number of successful extensions: 733
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)