Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0159
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    26   5.2  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    26   6.9  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    26   6.9  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   9.1  

>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
 Frame = -1

Query: 282 AFRDVSAGVEKSLSIAAT---PLIIRFSGSV*LNVFILFLNGIAKSLTL**KTIFRCTVS 112
           A ++VS+    +++ AA+   P + R   S   +      N  + SL     T  R T S
Sbjct: 112 ALKEVSSNTPPNMTRAASQPPPQVQRLPASAPKHDLYSSANASSASLH---PTEQRTTSS 168

Query: 111 PTIMSYAPQKHTTDTDNRSNNTKRI 37
           PTI SYA + HT    + S+    +
Sbjct: 169 PTIPSYANRTHTDSPTSLSHRLPNV 193


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 182 IKTLSYTDPEKRIIKGVAAIDNDFSTPALTSRKAVSATPLSPSE*KAKDIILSTS 346
           ++  ++++P K    GV  I+N  S+P+ +S   +  T +     K  +  LSTS
Sbjct: 198 LRNHNFSNPSKSSKNGVHTINNMQSSPSPSSSFLLPLTQIDSQNVKRSNNYLSTS 252


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = -3

Query: 265 RWRGEVIVNSCDTLNNPLLRVGVTQCLYSLLERNREIFDPLMKNHLPVHRVSN 107
           R +G ++V   + + +PL   G+T C +     +R I    + + L   R+ N
Sbjct: 284 RTKGMILVGDSNNMRHPLTGGGMTVCFHDAYLLSRFISPSAVPDLLDYERILN 336


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = -3

Query: 649 YLKYFKIVLEDFYKYTRDVN*FSSFIVLVANILH-SLQNKLI*NLKQ-SKTKKQLRNKIT 476
           YL+  ++V ++ Y Y R +N   S I ++AN    ++   L   L++  ++K+ ++N + 
Sbjct: 547 YLQALQLVEDERYDYDRVLNTTESAIKILANFCEPTIHEHLETALQELERSKRIIKNALI 606

Query: 475 VKY 467
           + Y
Sbjct: 607 IVY 609


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,499
Number of Sequences: 5004
Number of extensions: 59596
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)