Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0159
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44955| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_9670| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.6  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   28   9.6  

>SB_44955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 161 AIPFKKRIKTLSYTDPEKRIIKGVAAIDNDFSTPALTSRKAVSAT 295
           +IP +++  + S+    K   K +    N +S PALT  K V+ T
Sbjct: 232 SIPHERKAPSYSFGSRTKYAQKQITPSPNSYSLPALTGPKVVNKT 276


>SB_9670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +2

Query: 173 KKRIKTLSYTDPEKRIIKGVAAIDN--DFSTPALTSRKAVSATPLSPSE*KAKDIILSTS 346
           K  +K+L   +P    +K   +  N  DFS P L  R + S  PL+ S   ++  ++  +
Sbjct: 95  KSPVKSLGKENPSNSTLKSCNSSSNLPDFSPPRLRKRPSFSFKPLTRSSAPSRTPLVDKA 154

Query: 347 RL 352
            L
Sbjct: 155 NL 156


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 58   PIVCVCGVFLRRIRHDRWRHGAPEDGFSSEGQRFRDSVQEEN--KDIELHR 204
            P V + GVFL  +   R   G  EDG S E       + EE   +++E+ R
Sbjct: 2872 PGVIITGVFLEEVEVKRLLEGEREDGPSCEEVDEEKDISEEELLEEVEVQR 2922


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,634,437
Number of Sequences: 59808
Number of extensions: 413491
Number of successful extensions: 1042
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)