Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0159
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003141-12|AAP68910.1|  946|Caenorhabditis elegans Hypothetical...    33   0.23 
AF003141-11|AAP68909.1| 1437|Caenorhabditis elegans Hypothetical...    33   0.23 
Z38112-4|CAA86232.1|  809|Caenorhabditis elegans Hypothetical pr...    30   2.1  

>AF003141-12|AAP68910.1|  946|Caenorhabditis elegans Hypothetical
           protein W02D3.10b protein.
          Length = 946

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 110 GDTVHRKMVFHQRVKDFAIPFKKRIKTLSYTDPEKRIIKGVAAIDN 247
           G   + KM F+QR KDF   F K+++ +   + +  ++ G  A DN
Sbjct: 176 GKNNNSKMSFNQRWKDFVAVFIKKVRDIDQIELDDELLPGSDAADN 221


>AF003141-11|AAP68909.1| 1437|Caenorhabditis elegans Hypothetical
           protein W02D3.10a protein.
          Length = 1437

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 110 GDTVHRKMVFHQRVKDFAIPFKKRIKTLSYTDPEKRIIKGVAAIDN 247
           G   + KM F+QR KDF   F K+++ +   + +  ++ G  A DN
Sbjct: 176 GKNNNSKMSFNQRWKDFVAVFIKKVRDIDQIELDDELLPGSDAADN 221


>Z38112-4|CAA86232.1|  809|Caenorhabditis elegans Hypothetical
           protein E03A3.2 protein.
          Length = 809

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +2

Query: 167 PFKKRIKTLSYTDPEKRIIKGVAAIDNDFSTPALTSRKAVSATPLSPSE*KAKDIILST 343
           P K++I+ +S    EK + + ++A   DF     ++ +    +PL P++  A  + + T
Sbjct: 93  PKKQKIEPVSTVKLEKSVNQKISANSEDFDVSGPSNSRETQESPLDPNDFVANPLAIGT 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,412,599
Number of Sequences: 27780
Number of extensions: 329745
Number of successful extensions: 764
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)