Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0159
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 134 PSSGAPCLQRSCRMRRKNTPQTQTIGAI 51
           P    P  + S R RR+ TP+  ++  I
Sbjct: 396 PRQTPPSRKESGRRRRRRTPRYNSVSKI 423


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 458 EIVAGSKLITRISFIITH 405
           + + G K+  RISFI+ H
Sbjct: 350 QAITGLKVKRRISFILVH 367


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 254 STPALTSRKAVSATPLSPSE*KAKDIILSTS 346
           +T A TS     + P SP++    D+  STS
Sbjct: 228 ATMATTSTPGSGSLPASPADSGVSDVESSTS 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,386
Number of Sequences: 438
Number of extensions: 3957
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)