Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0159
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49960.1 68418.m06186 expressed protein ; expression supporte...    28   6.0  
At2g24710.1 68415.m02952 glutamate receptor family protein (GLR2...    28   6.0  
At5g19120.1 68418.m02275 expressed protein low similarity to ext...    28   7.9  

>At5g49960.1 68418.m06186 expressed protein ; expression supported
           by MPSS
          Length = 824

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 262 WRGEVIVNSCDTLNNPLLRV 203
           W+G V+V  CD  N PL+++
Sbjct: 403 WKGHVVVEMCDLDNEPLVKL 422


>At2g24710.1 68415.m02952 glutamate receptor family protein (GLR2.3)
           plant glutamate receptor family, PMID:11379626
          Length = 895

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 83  FCGAYDMIVGDTVHRKMVFHQRVKDFAIPFKKRIKTL--SYTDPEKR 217
           + G YD +VGDT    +V      DF  PF K    L    TDP KR
Sbjct: 526 YLGRYDAVVGDTT--ILVNRSSYVDFTFPFIKSGVGLIVEMTDPVKR 570


>At5g19120.1 68418.m02275 expressed protein low similarity to
           extracellular dermal glycoprotein EDGP precursor [Daucus
           carota] GI:285741, SP|P13917 Basic 7S globulin precursor
           {Glycine max}
          Length = 386

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 297 GVADTAFRDVSAGVEKSLSIAATPLIIRFSGSV*LNVFILFLNG 166
           GV  T+  +   GV  S S+  TPL+   SG+  +NV  + +NG
Sbjct: 204 GVVSTSSVEEVFGVAASRSLVYTPLLTGSSGNYVINVKSIRVNG 247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,925,972
Number of Sequences: 28952
Number of extensions: 288101
Number of successful extensions: 619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)