Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0156
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93396-5|CAB07714.1|  633|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical p...    28   7.9  
DQ645956-1|ABG36764.1|  624|Caenorhabditis elegans molting prote...    28   7.9  
AF039718-5|AAP68905.1|  760|Caenorhabditis elegans Prion-like-(q...    28   7.9  
AF039718-4|AAP68906.2|  696|Caenorhabditis elegans Prion-like-(q...    28   7.9  

>Z93396-5|CAB07714.1|  633|Caenorhabditis elegans Hypothetical
           protein ZC15.7 protein.
          Length = 633

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 304 SILIHTLLTDNLPSIPSIDKTKRVENK 384
           ++L H  +TDNL +   I KT+RV+ +
Sbjct: 50  NVLFHAAITDNLKNFQFIMKTRRVKKE 76


>Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.13 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +3

Query: 108 IFMKVDMLITLILQLHIFTTRPTQRLPTYKIFLIVY*KF--IFLIFRQIYVEITQNYKLF 281
           + M   + I+LIL + ++T +   +LP   I+L++       F+ F+   +      K +
Sbjct: 11  LMMFTALCISLILMISVYTYKRKDQLPVVYIYLMIACSIGCCFVEFQSDIIPYFMKRKAY 70

Query: 282 R*VHTNLFNSHSYF 323
             +++NL  S + F
Sbjct: 71  MWMYSNLGESFTLF 84


>DQ645956-1|ABG36764.1|  624|Caenorhabditis elegans molting protein
           MLT-4 protein.
          Length = 624

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 304 SILIHTLLTDNLPSIPSIDKTKRVENK 384
           ++L H  +TDNL +   I KT+RV+ +
Sbjct: 50  NVLFHAAITDNLKNFQFIMKTRRVKKE 76


>AF039718-5|AAP68905.1|  760|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform a protein.
          Length = 760

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +1

Query: 397 KEKINAFKKKSL*YYYKMNLTSHIRVLKLK*FRKNYNSFNSFARFTILVRVPYD 558
           +E+I    K  L YY+     S  R LK +    NY   N  A F  ++R+  D
Sbjct: 135 REEIKQLLKNQLEYYFSRENLSSDRYLKCQMDSDNYVPINVLAGFPKIMRLTTD 188


>AF039718-4|AAP68906.2|  696|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform b protein.
          Length = 696

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +1

Query: 397 KEKINAFKKKSL*YYYKMNLTSHIRVLKLK*FRKNYNSFNSFARFTILVRVPYD 558
           +E+I    K  L YY+     S  R LK +    NY   N  A F  ++R+  D
Sbjct: 37  REEIKQLLKNQLEYYFSRENLSSDRYLKCQMDSDNYVPINVLAGFPKIMRLTTD 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,795,906
Number of Sequences: 27780
Number of extensions: 261802
Number of successful extensions: 488
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)