Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0156
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24240.1 68414.m03056 ribosomal protein L19 family protein si...    28   7.4  
At5g11750.1 68418.m01372 ribosomal protein L19 family protein si...    27   9.8  
At4g11630.1 68417.m01860 ribosomal protein L19 family protein si...    27   9.8  
At4g07515.1 68417.m01166 expressed protein                             27   9.8  

>At1g24240.1 68414.m03056 ribosomal protein L19 family protein
           similar to plastid ribosomal protein L19 precursor
           [Spinacia oleracea] gi|7582403|gb|AAF64312
          Length = 222

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 322 LLTDNLPSIPSIDKTKRVENKINF*KEKINAFKK 423
           L + NL  I  +DK K    K+ + +EK+NA KK
Sbjct: 188 LYSPNLRVIKVVDKKKVRRAKLYYLREKVNALKK 221


>At5g11750.1 68418.m01372 ribosomal protein L19 family protein
           similar to plastid ribosomal protein L19 precursor
           [Spinacia oleracea] gi|7582403|gb|AAF64312
          Length = 229

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 322 LLTDNLPSIPSIDKTKRVENKINF*KEKINAFKK 423
           L + NL  I  +DK K    K+ + ++K+NA KK
Sbjct: 195 LYSPNLREIKVVDKKKVRRAKLYYLRDKVNALKK 228


>At4g11630.1 68417.m01860 ribosomal protein L19 family protein
           similar to plastid ribosomal protein L19 precursor
           [Spinacia oleracea] gi|7582403|gb|AAF64312
          Length = 225

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 322 LLTDNLPSIPSIDKTKRVENKINF*KEKINAFKK 423
           L + NL  I  +DK K    K+ + ++K+NA KK
Sbjct: 191 LYSPNLREIKVVDKKKVRRAKLYYLRDKVNALKK 224


>At4g07515.1 68417.m01166 expressed protein
          Length = 103

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 701 VSAIYQNK*CLERCCNKILQEL*VCVGNI 615
           ++ ++ N   +E CCN ++QE  VC  N+
Sbjct: 40  ITVVFGNGTLIEACCNDLVQEGKVCHDNL 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,275,085
Number of Sequences: 28952
Number of extensions: 215818
Number of successful extensions: 310
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)