Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0155
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos...    26   4.5  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   5.9  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    25   7.9  

>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/75 (24%), Positives = 30/75 (40%)
 Frame = -2

Query: 600 ISQQPDAPL*KRISDCETACVCVGRRSGYRDAARDDDTKCEVYQAVGPKRYLLADLVDWF 421
           +  +P     K I   ++  +C   R+      +D   K    Q+     Y + DL D  
Sbjct: 8   VGSKPTEKRPKDIKSIKSVPICEKHRAS---VVKDISRKISRIQSATLPEYQIRDLNDAI 64

Query: 420 YKLMRKDEKWGGYIR 376
            +LMR+  +W   IR
Sbjct: 65  NRLMREKHEWEVQIR 79


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = +2

Query: 257 SEVASLSIPSQ*RFPSG*AGEMALTKATF--RGSIGSYFMS*RMYPPHFSSFLISL*NQS 430
           S  AS S+ S    PS  +  ++ + AT     S  S   S     P  SSF+ SL + S
Sbjct: 28  SAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSS 87

Query: 431 TKSASK*RFGPTAW*TSHLVSSSRAA 508
           ++ +S      T+  ++ L SSS A+
Sbjct: 88  SQQSSSSSASLTSSSSATLTSSSSAS 113


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 578  LYKNGLATVKQPVFVSDVAQGI 513
            L K GL++ K P+FVS + +G+
Sbjct: 1016 LGKLGLSSSKSPIFVSSILEGL 1037


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 363 YDPILPLKVALVNAISPAYPLGNLHWEGIEREATSDMW*SACPPLRI 223
           Y P++     LV   +PAYP  + +W  +ER   +  W  A   +R+
Sbjct: 327 YGPLMLGAATLVFESTPAYPDYSRYWSVVERHRLT-QWYIAPTAIRL 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,161,425
Number of Sequences: 5004
Number of extensions: 70754
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)