Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0155
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336... 43 3e-04
03_01_0593 + 4379263-4379377,4380359-4380491,4380585-4380656,438... 36 0.023
02_04_0592 - 24171698-24172285 35 0.070
07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,411... 31 0.87
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269... 29 4.6
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260... 28 6.1
11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259 28 8.1
10_08_0440 + 17930970-17931297,17931682-17931905,17932439-179324... 28 8.1
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653... 28 8.1
>02_05_1223 +
35033273-35033353,35033455-35033539,35033613-35033683,
35034400-35034531,35034654-35034769,35035128-35035251,
35035349-35035417,35035508-35035628,35035707-35035843
Length = 311
Score = 42.7 bits (96), Expect = 3e-04
Identities = 28/82 (34%), Positives = 42/82 (51%)
Frame = -3
Query: 689 EEYPTATIIRASDIYGSEDRFLRSLVNKMRFHSNLMPLYKNGLATVKQPVFVSDVAQGIV 510
+E+P ATI+R + + G+EDR L + + +PL +G +T QPV+V DVA IV
Sbjct: 119 KEFPEATIMRPATMIGTEDRILNRWAQFAK-NWGFLPLVDSG-STKIQPVYVVDVAAAIV 176
Query: 509 TPRATTTLNVKSTKPLGQNATY 444
++ T LG Y
Sbjct: 177 NSLKDDGTSMGKTYELGGPEIY 198
>03_01_0593 +
4379263-4379377,4380359-4380491,4380585-4380656,
4380739-4380813,4380896-4380967,4381055-4381126,
4381251-4381322,4381403-4381468,4381547-4381612,
4381689-4381978,4382072-4382355,4382690-4382961,
4383411-4383546,4383840-4383970,4384078-4384234,
4384334-4384477
Length = 718
Score = 36.3 bits (80), Expect = 0.023
Identities = 26/75 (34%), Positives = 37/75 (49%)
Frame = -1
Query: 319 FTSLSTRKSSLGRN*KGSYFRYVVIGVPTLEDLGVTLTHMEDQVPWELKPFRAHQYYMDR 140
FTSLS+ K +N + + + V+ +P L+DL V H +P +LK Q +
Sbjct: 195 FTSLSSLKKLYLQNNQFTGYINVLANLP-LDDLNVANNHFTGWIPSQLKKINNLQTDGNS 253
Query: 139 LGEFPKPDPPPVYSA 95
P P PPP YSA
Sbjct: 254 WSNGPAPPPPP-YSA 267
>02_04_0592 - 24171698-24172285
Length = 195
Score = 34.7 bits (76), Expect = 0.070
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -1
Query: 262 FRYVVIGVPTLEDLGVTL--THMEDQVPWEL-KPFRAHQYYMDRLGEFPKPDPPPVYSA* 92
++Y ++G P +DL + T M+D+V L + + Y +++L + P+ DPPP A
Sbjct: 120 YQYALVGEPRRKDLWILCRQTSMDDEVYGRLLEKAKEEGYDVEKLRKTPQDDPPPESDAA 179
Query: 91 IVFINNSYLLDKLYGR 44
++ L+G+
Sbjct: 180 PTDTKGTWWFKSLFGK 195
>07_01_0552 +
4109906-4109983,4110422-4110484,4110496-4110525,
4110567-4110621,4111046-4111143,4112259-4112417,
4112518-4112577,4113436-4113624,4113749-4113802,
4113959-4114045,4114149-4114881,4115282-4115373,
4115739-4115812,4116097-4116199,4116342-4117204,
4117649-4117724,4117861-4117972,4118092-4118168,
4118272-4118352,4118710-4118789,4118860-4118875
Length = 1059
Score = 31.1 bits (67), Expect = 0.87
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 614 VNKMRFHSNLMPLYKNGLATVKQPVFVSDVAQGIV 510
+NK +FH+ + PLYK ++ P+F+S + + V
Sbjct: 876 LNK-KFHARIKPLYKQRFFSILMPIFLSKIKESTV 909
>05_04_0272 +
19624898-19625071,19625909-19626370,19626471-19626905,
19626992-19627237,19627318-19628085,19628245-19628417,
19629337-19629440,19629525-19630127,19630210-19630214
Length = 989
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -3
Query: 596 HSNLMPLYKNGLATVKQPVFVSDVAQGIVTPRATTTLNVKSTKPLGQNATYLP 438
H +L LY+ A V Q + S +Q I + T ++ + P G +A+ LP
Sbjct: 426 HVHLYKLYRGMTAAVIQDISFSHFSQWISIVSSRGTCHIFTLSPFGGDASLLP 478
>11_05_0081 -
18924353-18924462,18925068-18925187,18925569-18926086,
18927392-18927471,18927680-18927782,18928084-18928295,
18928392-18929210,18929331-18929444,18929935-18929983,
18930115-18930271,18930354-18930807,18930938-18931147
Length = 981
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +2
Query: 104 NWWRVWFRELSKPIHVVLMGAKRFQFPRNLVFHVRQGDAQILKGG 238
NW RVW L I L K Q+ VFHV + KGG
Sbjct: 385 NWRRVWVLLLWLAICAGLFTYKFIQYRHRAVFHVMGYCVCVAKGG 429
>11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259
Length = 359
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 283 RN*KGSYFRYVVIGVPTLEDLGVTLTHMEDQVP 185
RN K RYV G PT++D+ V + M +VP
Sbjct: 15 RNRKVVLRRYVTAGYPTVDDMEVVSSTMMPRVP 47
>10_08_0440 +
17930970-17931297,17931682-17931905,17932439-17932465,
17933747-17934340
Length = 390
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 125 RELSKPIHVVLMGAKR--FQFPRNLVFHVRQGDAQILKGGHADHHISE 262
R L PIHV + A R RN++F+ + D Q+L D H+S+
Sbjct: 145 RGLQWPIHVFGLVAARDVIDHNRNIIFNRTRDDCQLLTQEIIDCHVSK 192
>07_03_1284 +
25463476-25463557,25465088-25465220,25465307-25465378,
25465476-25465544,25465629-25465700,25465792-25465860,
25466155-25466220,25466299-25466364,25466452-25466786,
25466931-25467214,25467796-25468067,25468152-25468287,
25468625-25468755,25468890-25469046,25469185-25469327,
25470105-25470190,25471530-25472962,25474563-25474712,
25475221-25475322,25475467-25475568
Length = 1319
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -1
Query: 232 LEDLGVTLTHMEDQVPWELKPFRAHQYYMDRLGEFPKPDPPPVYS 98
L DL V +P +LK + Q + G P P PPP S
Sbjct: 185 LTDLNVANNQFTGWIPDKLKKIKNLQTNGNSFGSGPSPPPPPYQS 229
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,719,344
Number of Sequences: 37544
Number of extensions: 488067
Number of successful extensions: 1146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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