Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0155
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1)                    29   2.7  
SB_57648| Best HMM Match : Homeobox (HMM E-Value=5.3e-30)              29   4.7  
SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)            28   6.2  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_30217| Best HMM Match : Flavi_glycop_C (HMM E-Value=8.2)            28   8.3  
SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 27/61 (44%), Positives = 40/61 (65%)
 Frame = -3

Query: 692 REEYPTATIIRASDIYGSEDRFLRSLVNKMRFHSNLMPLYKNGLATVKQPVFVSDVAQGI 513
           REE+P ATI+R   ++G ED+FL +    +R     +PL + G+ T K PV+V+DVAQ I
Sbjct: 159 REEFPNATILRPGTVFGHEDKFL-NYYAYLRSLPLGIPLIEGGMNTKKMPVYVADVAQSI 217

Query: 512 V 510
           +
Sbjct: 218 L 218


>SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1)
          Length = 256

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 333 KQLSGAVSGRTSCRSECIHPIFRPSSLVCKTNQPNRQVSSVL 458
           K + G V+ R   R+ CI P+F  + L+ K  +   Q+S++L
Sbjct: 168 KSVFGKVAHRKGIRAACICPVFTDTPLLDKIKEEMPQMSTLL 209


>SB_57648| Best HMM Match : Homeobox (HMM E-Value=5.3e-30)
          Length = 205

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 181 ELKPFRAHQYYMDRLGEFPKPDP 113
           +L P R  QY M R G FP+P P
Sbjct: 43  DLLPPRRDQYMMQRQGTFPEPTP 65


>SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)
          Length = 1235

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 336  QLSGAVSGRTSCRSECIHPIFRPSSLVCKTNQPNRQVSSVLAQRLGRLHI 485
            QL+     + + R    HP F   SL+C T++  +Q S  LA  + +LH+
Sbjct: 1178 QLNSCPWQQATPRGHVTHPSF---SLMCSTHKSFQQYSGFLASVVSKLHL 1224


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +1

Query: 124  SGTLQADPCS---TDGREKVSVPTEPGLPCAS 210
            SGTL+ADP S   T+G E+ + P  P  P  S
Sbjct: 2951 SGTLKADPASFSTTEGNEQPTAPAPPISPTES 2982


>SB_30217| Best HMM Match : Flavi_glycop_C (HMM E-Value=8.2)
          Length = 132

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 506 PRATTTLNVKSTKPLGQNA-TYLPIWL 429
           P  T TL    T PL  +A +YLP+WL
Sbjct: 17  PSGTMTLECHYTTPLPSHAASYLPVWL 43


>SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1924

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 123  FGNSPSRSM*Y*WARKGFSSHGTWSSMCVKVT 218
            F N PS+S    W +K F  HGT   +C K T
Sbjct: 1052 FRNFPSKSKIVSWIKK-FREHGTVVDLCSKAT 1082


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,594,098
Number of Sequences: 59808
Number of extensions: 534895
Number of successful extensions: 1232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)