Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0155
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical ...    55   4e-08
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ...    30   1.4  
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    29   4.2  
Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AC006742-6|AAF60498.1|  778|Caenorhabditis elegans Hypothetical ...    28   7.3  
AC006742-3|AAF60501.1|  778|Caenorhabditis elegans Hypothetical ...    28   7.3  

>AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.2 protein.
          Length = 431

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
 Frame = -3

Query: 692 REEYPTATIIRASDIYGSEDRFLRSLVNKMR-FHSNLMPLYKNGLATVKQPVFVSDVAQG 516
           REE+P ATIIR S IYG  D F++  V++ R    + + LYK G  T K P++V DVA G
Sbjct: 205 REEFPEATIIRPSVIYGELDGFIQYYVSRWRKTPLDYVYLYKKGEETYKMPIWVGDVAAG 264

Query: 515 I 513
           I
Sbjct: 265 I 265



 Score = 34.3 bits (75), Expect = 0.084
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 522 SGYRDAARDDDTKCEVYQAVGPKRYLLADLVDWFYK 415
           +G + A  D   K   Y+ VGP  Y L++L+D+ YK
Sbjct: 263 AGIQSAVNDPTAKGHTYEFVGPHCYQLSELIDFMYK 298


>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
           protein Y76B12C.2 protein.
          Length = 1119

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 191 GSVGTETFSRPSVLHGSAWRVPETRPSTSLLSLNCF 84
           G V   +  + S+L G   R PETR  T+L+   CF
Sbjct: 590 GVVSVASIEQDSLLEGHEARYPETRRLTALVDAKCF 625


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
            protein F47C12.1 protein.
          Length = 1827

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 339  LSGAVSGRTSCRSECIHPIFRPSSLVCKTNQPNRQVSSVLAQRLGRLHI*C 491
            L G  S    CR+    P     + +C TN P R  +  + ++LGR    C
Sbjct: 1763 LPGVKSTTCLCRTGFAGPQCEEITDICSTNNPCRNGARCIGEKLGRFKCQC 1813


>Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical
           protein R09E10.5 protein.
          Length = 1459

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = -3

Query: 644 GSEDRFLRSLVNKMRFHSNLMPLYKNGLATVKQPVFVSDVAQGIVTPRATTTLNVKSTKP 465
           G+ D ++R   N   F   +M   + G+A     +F +D A  +      + ++ +S   
Sbjct: 227 GTADSYVRCDSNSDYFLDQMMIWVQEGVAG--GAMFRADAAVVVTWYNTASAISGRSDID 284

Query: 464 LGQNATYLPIWLIGFT 417
            GQ  TY  IWL   T
Sbjct: 285 AGQTGTYQVIWLTDST 300


>AC006742-6|AAF60498.1|  778|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.2 protein.
          Length = 778

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 689 EEYPTATIIRASDIYGSEDRFLRSL-VNKMRFHSNLMPLYKNGLATVKQPV 540
           E YP  T+   ++++G+ED     L +++  F  N     K+ ++T++Q +
Sbjct: 617 EGYPWGTVRETTNLHGAEDEIRDFLKIDRHDFQQNRKADLKSAMSTLQQEI 667


>AC006742-3|AAF60501.1|  778|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.6 protein.
          Length = 778

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 689 EEYPTATIIRASDIYGSEDRFLRSL-VNKMRFHSNLMPLYKNGLATVKQPV 540
           E YP  T+   ++++G+ED     L +++  F  N     K+ ++T++Q +
Sbjct: 617 EGYPWGTVRETTNLHGAEDEIRDFLKIDRHDFQQNRKADLKSAMSTLQQEI 667


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,357,987
Number of Sequences: 27780
Number of extensions: 397796
Number of successful extensions: 871
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)