Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0155
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.30 
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    23   2.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 521 QGIVTPRATTTLNVKSTKPLGQNATYLPI 435
           Q +V    TTT+N  +T  +  + T +PI
Sbjct: 828 QSVVVTNVTTTINTPTTSVISMSGTTVPI 856


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 300 GNLHWEGIEREATSDM 253
           G + WEG+E+E   D+
Sbjct: 100 GGIFWEGLEKEVGDDI 115


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 85  KQFKLSKLVEGLVSGTLQADP 147
           K F L  +V  L+SG  Q DP
Sbjct: 108 KMFILPLIVSSLISGMAQLDP 128


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 309 YPLGNLHWEGIEREATSDM 253
           YP+  + WE   RE   D+
Sbjct: 545 YPIEEIKWERANRELPDDL 563


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 309 YPLGNLHWEGIEREATSDM 253
           YP+  + WE   RE   D+
Sbjct: 545 YPIEEIKWERANRELPDDL 563


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 227 GFGRHLDAHGRPG 189
           G+GRHL  H + G
Sbjct: 209 GYGRHLPGHAQMG 221


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -1

Query: 244 GVPTLEDLG 218
           GVPTLE+LG
Sbjct: 209 GVPTLEELG 217


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 459  PKRYLLADLVDWFYKLMRKDEKW--GGYIRYDMKYD 358
            P  YLL D +   Y   RK+  W  G ++  ++ Y+
Sbjct: 977  PTEYLLEDSMKQQYGKRRKEPPWLEGVHVTPELIYE 1012


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,740
Number of Sequences: 438
Number of extensions: 4885
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)