Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0155
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20360.1 68415.m02377 expressed protein                             37   0.015
At2g22350.1 68415.m02652 RNase H domain-containing protein low s...    30   1.7  
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote...    29   2.2  
At4g29050.1 68417.m04155 lectin protein kinase family protein co...    29   2.9  
At1g30000.1 68414.m03669 glycoside hydrolase family 47 protein s...    29   3.9  
At3g23590.1 68416.m02967 expressed protein                             28   5.1  
At1g09090.2 68414.m01015 respiratory burst oxidase protein B (Rb...    28   6.8  
At1g09090.1 68414.m01014 respiratory burst oxidase protein B (Rb...    28   6.8  
At4g16250.1 68417.m02465 phytochrome D (PHYD) nearly identical t...    27   8.9  
At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to SP|P1...    27   8.9  
At1g52500.1 68414.m05926 formamidopyrimidine-DNA glycolase famil...    27   8.9  

>At2g20360.1 68415.m02377 expressed protein
          Length = 402

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 26/74 (35%), Positives = 37/74 (50%)
 Frame = -3

Query: 680 PTATIIRASDIYGSEDRFLRSLVNKMRFHSNLMPLYKNGLATVKQPVFVSDVAQGIVTPR 501
           P ATI+R + + G+EDR L      ++ +   +PL   G  T  QPV+V DVA  IV   
Sbjct: 212 PEATIMRPATMIGTEDRILNPWSMFVKKY-GFLPLIGGG-TTKFQPVYVVDVAAAIVAAL 269

Query: 500 ATTTLNVKSTKPLG 459
                ++  T  LG
Sbjct: 270 KDDGSSMGKTYELG 283


>At2g22350.1 68415.m02652 RNase H domain-containing protein low
           similarity to reverse transcriptase [Arabidopsis
           thaliana] GI:976278; contains Pfam profile PF00075:
           RNase H
          Length = 321

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = -2

Query: 570 KRISDCETACVCVGRRSGYRDAARDDDTKCEVYQAVGPK----RYLLADLVDWFYKLMRK 403
           + +SD     +C G         RD      ++  + P+    ++  A L++W YK +R+
Sbjct: 27  RHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRLVPRDQIRQFFTASLLEWIYKNLRE 86

Query: 402 DEKW 391
              W
Sbjct: 87  RGSW 90


>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21 receptor type
           precursor, Oryza sativa, PIR:A57676
          Length = 1025

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = -1

Query: 292 SLGRN*KGSYFRYVVIGVPTLEDLGVTLTHMEDQVPWELKPFRAHQYYMDRLGEFPKPDP 113
           SLGRN     F   +  + +L+ L      +E ++P ++   +   ++   L +F    P
Sbjct: 183 SLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQMIFFRIALNKFNGVFP 242

Query: 112 PPVYS 98
           PP+Y+
Sbjct: 243 PPIYN 247


>At4g29050.1 68417.m04155 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain and PF00069:
           Protein kinase domain
          Length = 669

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 227 GFGRHLDAHGRPGSVGTETFSRPSVLHG 144
           GFG   ++   P SV T TF+ P V HG
Sbjct: 641 GFGEAAESLAEPCSVATLTFTEPFVSHG 668


>At1g30000.1 68414.m03669 glycoside hydrolase family 47 protein
           similar to GI:5579331 from [Homo sapiens]; contains Pfam
           profile PF01532: Glycosyl hydrolase family 47
          Length = 624

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 402 DEKWGGYIRYDMKYDPILPL 343
           D  W GY +Y M YD ++P+
Sbjct: 137 DHAWSGYRKYAMGYDELMPI 156


>At3g23590.1 68416.m02967 expressed protein 
          Length = 1309

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -3

Query: 581  PLYKNGLATVKQPVFVSDVAQGIVTPRATTTLNVKSTKPLGQNATYLPIWLIGFTN 414
            P++ NG+        +S V + I    ATT +++ S  P G +   LP+ L  F +
Sbjct: 898  PVFMNGVDWPSPATNLSTVEEYITKILATTGVDIPSLAPGGSSPATLPLPLAAFVS 953


>At1g09090.2 68414.m01015 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 843

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 104 NWWRVWFRELSKPIHVVLMGAKRFQFPRNLVFHVRQGDAQILKG 235
           NW R+W   L   I + L   K  Q+ R  VF V      + KG
Sbjct: 294 NWKRIWVLTLWISICITLFTWKFLQYKRKTVFEVMGYCVTVAKG 337


>At1g09090.1 68414.m01014 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 622

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 104 NWWRVWFRELSKPIHVVLMGAKRFQFPRNLVFHVRQGDAQILKG 235
           NW R+W   L   I + L   K  Q+ R  VF V      + KG
Sbjct: 294 NWKRIWVLTLWISICITLFTWKFLQYKRKTVFEVMGYCVTVAKG 337


>At4g16250.1 68417.m02465 phytochrome D (PHYD) nearly identical to
           SP|P42497 Phytochrome D {Arabidopsis thaliana}
          Length = 1164

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -2

Query: 522 SGYRDAARDDDTKCEVYQAVGPKRYLLADLVDWFYKLMRKDEKWGG 385
           +GY  AA   D  C +  A   KR    D + WF     K+ KWGG
Sbjct: 528 AGYPRAAALGDAVCGMAVACITKR----DFLFWFRSHTEKEIKWGG 569


>At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to
           SP|P14713 Phytochrome B {Arabidopsis thaliana}
          Length = 1172

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -2

Query: 522 SGYRDAARDDDTKCEVYQAVGPKRYLLADLVDWFYKLMRKDEKWGG 385
           +GY  AA   D  C +  A   KR    D + WF     K+ KWGG
Sbjct: 524 AGYPGAAALGDAVCGMAVAYITKR----DFLFWFRSHTAKEIKWGG 565


>At1g52500.1 68414.m05926 formamidopyrimidine-DNA glycolase family
           protein / mutM, putative (MMH-1) identical to mutM
           homologue-2 [Arabidopsis thaliana] GP:3550983
           PMID:9819050; contains Pfam profile PF01149:
           Formamidopyrimidine-DNA glycosylase
          Length = 274

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 146 HVVLMGAKRFQFPRNLVFHVRQGDAQILKGGHADHHIS 259
           H V + A   +FP   +FH R G       G   HH+S
Sbjct: 225 HAVQVNADSKEFPVEWLFHFRWGKKAGKVNGKLSHHLS 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,624,600
Number of Sequences: 28952
Number of extensions: 382996
Number of successful extensions: 946
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)