Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0154
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)                    29   3.0  
SB_59287| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)                    29   5.2  
SB_48627| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  

>SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)
          Length = 283

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 64  GFEENLMRNWVCLVEHESSRDTSKTN 141
           GFEE + R W+   + E S D +KTN
Sbjct: 33  GFEEEVKRQWIGCDKLEGSNDITKTN 58


>SB_59287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 374 AAANIRQRALAVVLPTVPGIEAVTFVNFLSAFRCLSDV 261
           A  N+++RAL +  P +  +  ++ V+ LS    LSDV
Sbjct: 90  ALENVQRRALKIAFPVLSDVSVLSDVSVLSDVSVLSDV 127


>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
          Length = 334

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 57  ETWLRRKSHEELGMSGRAREQP*HIQDEHEP 149
           E WL RK H E  +S   RE+   ++++H+P
Sbjct: 223 EAWLERKEHREDSLSEHEREE---VKNKHKP 250


>SB_48627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 305 TFVNFLSAFRCLSDVVSRRSEHLTLQSLPGLAPLLHQYRS 186
           T +  L+AF C+  VVS R +   L+ LP L  +L   R+
Sbjct: 7   TLLGTLAAFVCVIAVVSARPQEDELRDLPSLDDILASQRT 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,724,803
Number of Sequences: 59808
Number of extensions: 404222
Number of successful extensions: 804
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)