Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0154
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33985.1 68417.m04822 expressed protein                             29   4.2  
At5g25960.1 68418.m03088 hypothetical protein various predicted ...    27   9.8  
At4g28550.1 68417.m04084 RabGAP/TBC domain-containing protein si...    27   9.8  

>At4g33985.1 68417.m04822 expressed protein
          Length = 154

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 27  HEMRSRA*AEETWLRRKSHEELGMSGRAR 113
           H     A  EE WLR+K  + LG  GR++
Sbjct: 19  HSWSPDADREEAWLRKKGKQSLGRLGRSK 47


>At5g25960.1 68418.m03088 hypothetical protein various predicted
           proteins, Arabidopsis thaliana contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 352

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +1

Query: 55  RKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGASP 219
           ++H F+   +RN    ++      T KT    NGS +    QI  + W   G  P
Sbjct: 55  KQHAFDHPALRNHKIQMKPSVDFGTKKTTIPNNGSSE----QITSQIWSKSGNCP 105


>At4g28550.1 68417.m04084 RabGAP/TBC domain-containing protein
           similar to SP|P09379 GTPase-activating protein GYP7
           (Fragment) {Yarrowia lipolytica}; contains Pfam profile
           PF00566: TBC domain
          Length = 424

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 300 KRHRFDAWYGWKNHCQGSLPDISS 371
           + HR + +Y WK  C+  +P + S
Sbjct: 100 RNHRREQYYAWKEECKNMVPLVGS 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,391,093
Number of Sequences: 28952
Number of extensions: 266278
Number of successful extensions: 671
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)