Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0153
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    30   0.28 
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   4.5  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   7.9  

>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 217 GIFCIAQYGFELSHFLNYL*N*PKINAA 134
           G +CI+ +G+ L  +L Y+    K+NAA
Sbjct: 322 GFYCISNFGYGLREYLRYIHQKQKVNAA 349


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -3

Query: 250 IRRVFSEKMYDGIFCIAQYGFE 185
           +  +++E +Y G+F + +YGF+
Sbjct: 829 LEALYTESVYSGLFDLVEYGFD 850


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = +2

Query: 227 FFTKNSPYGFFKILILC*I-----FYLVLTLTTHLNNSNITSK 340
           ++T +S Y  F+I++LC +     F LV  +     N+N T+K
Sbjct: 347 YYTLHSIYKIFRIMVLCGVVTIFSFSLVALIFCSNTNNNSTNK 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,818
Number of Sequences: 5004
Number of extensions: 44636
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)