Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0153
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61952-1|AAB03159.2|  110|Caenorhabditis elegans Hypothetical pr...    32   0.34 
Z81117-8|CAB03316.2|  334|Caenorhabditis elegans Hypothetical pr...    30   1.8  

>U61952-1|AAB03159.2|  110|Caenorhabditis elegans Hypothetical
           protein F42A9.6 protein.
          Length = 110

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 230 FTKNSPYGF-FKILILC*IFYLVLTLTTHLNNSNITSKNLTIESIGSHDSSDSFIYY*SQ 406
           F KN  Y   F + +L  IFYL L L  +    NI  K L  +++G H  S SFI++ + 
Sbjct: 3   FKKNDRYMLPFYLYVLFTIFYL-LFLGGYFFFVNIFYKELVKQALGDHSDSVSFIWHFAD 61

Query: 407 LFI 415
           + +
Sbjct: 62  IML 64


>Z81117-8|CAB03316.2|  334|Caenorhabditis elegans Hypothetical
           protein T06E6.7 protein.
          Length = 334

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 248 YGFFKILILC*IFYLVLTLTTHLNNSNITSKNLTIESIGSHDSSDSFI 391
           +G F I   C + YL + ++ +LN  N ++ N TI S   H  + S I
Sbjct: 239 FGVFSIT--CFVPYLYIVISCYLNYHNQSANNYTIVSFSFHGITSSMI 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,156,707
Number of Sequences: 27780
Number of extensions: 242517
Number of successful extensions: 460
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)