Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0152
         (732 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    28   0.068
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.9  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   4.4  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   7.8  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 0.068
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 42  NPRMAARSMISSCDAVPRACSY 107
           NP  ++RS+++SC +VP   SY
Sbjct: 93  NPTYSSRSVMTSCSSVPTTASY 114


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 191 TKATKPKVFPMDPPNDTDPDERSLECNK 274
           + ++ P VFP+D P  + P +  L+ +K
Sbjct: 183 SSSSPPGVFPVDAPMHSPPGDGILDFSK 210


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 162 SPSDSDGTASPKP 200
           +P  SDGT SP+P
Sbjct: 70  TPLPSDGTTSPEP 82


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 292 DLNWNNIKNISDEKFEK 342
           D++W  +K  +DE  +K
Sbjct: 459 DISWKEVKEAADEVLKK 475


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,229
Number of Sequences: 336
Number of extensions: 2291
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)