Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0152
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    29   0.90 
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    27   2.1  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   2.8  

>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = -1

Query: 621 VRRAELSPSRS---CYRELAISGWRP 553
           +++ E SP+ S   C+R LA+SGW P
Sbjct: 188 LKKFETSPNPSNNGCFRSLALSGWNP 213


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 731 RRLLAYPIDVSLEMRRDPVPRVAVLEVQPETQQGRILFDELSYLHLDLVTENL 573
           R L+  P   S+E+  +   R   L V PE      LF+E S LH++   E L
Sbjct: 500 RELVFLPNLGSVELEIELEDRTLTLTVTPEQAAFISLFEETSTLHIEKAAELL 552


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 162 SPSDSDGTASPKPLNPRYSQWTRPTTRTRMKDRSS 266
           SP    G+ SP P +   S  +R   R+R +DRSS
Sbjct: 121 SPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSS 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,578
Number of Sequences: 5004
Number of extensions: 41048
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)