Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0152
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0928 - 7159857-7159922,7159923-7160024,7160126-7160206,716... 39 0.004
11_06_0466 + 23903000-23904041,23905282-23905672,23905708-23906188 31 0.94
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 30 1.6
06_01_0065 + 549972-550770,551577-552190,552392-552544,552769-55... 30 1.6
08_02_0456 - 17362080-17364156,17364853-17364942,17372615-173733... 30 2.2
02_02_0454 + 10436491-10436820,10437487-10437570,10437667-104377... 30 2.2
11_06_0513 + 24466131-24469487 29 3.8
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778... 29 3.8
10_08_0637 - 19482088-19482108,19482280-19482881,19484611-19485397 29 5.0
02_01_0120 + 884467-887649 29 5.0
05_05_0273 - 23744218-23744342,23744431-23744521 28 6.6
03_03_0103 - 14442293-14442478,14442915-14442961,14443247-14443373 28 8.8
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 28 8.8
>06_01_0928 -
7159857-7159922,7159923-7160024,7160126-7160206,
7160289-7160384,7160462-7160566,7160648-7160722,
7161372-7161431,7161960-7162090,7162175-7162250,
7163390-7163459,7163603-7163664,7163788-7163871,
7163973-7164047,7164448-7164585,7164733-7164791,
7164910-7165123,7167996-7168091,7168701-7169639
Length = 842
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +1
Query: 310 IKNISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSVETNFI 489
+ +ISDE EK+ +ALK N + + L + + A+A+ L+ N+ + L + N I
Sbjct: 642 MNDISDEGAEKVADALKQNKTISTVDLGGNNIHSKGVSAIAETLKDNSVVTTLELSYNPI 701
Query: 490 SP 495
P
Sbjct: 702 GP 703
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +1
Query: 283 KLTDLNWNNIKNISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALR 462
K+T L+ N NI+ E + E +K + LSL ++D A +ADAL+ N +
Sbjct: 606 KITVLDIGN-NNITSEGSLHVAEFIKRTKSLLWLSLYMNDISDEGAEKVADALKQNKTIS 664
Query: 463 VLSVETNFI 489
+ + N I
Sbjct: 665 TVDLGGNNI 673
>11_06_0466 + 23903000-23904041,23905282-23905672,23905708-23906188
Length = 637
Score = 31.1 bits (67), Expect = 0.94
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 43 IRGWPQDQ*SPPVMQCREPVRIHLDDESGPVS-RVASEQGPARRTRM 180
+RG Q PPV+ C R+ DDE+ V RV E PA R +
Sbjct: 435 VRGLVAVQLPPPVLGCHLAERLLFDDETADVRFRVRGETFPAHRAEL 481
>08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 280 QKLTDLNWNNIKNISDEKFEKLFEALKSNSHVEVLSL-VNVGLTDRTAGALAD 435
+ LT L+ + I+ + EKLF + +H+E LSL + + AG +AD
Sbjct: 1161 KNLTQLHKLGVSGINRKNSEKLFSVILRLAHLESLSLKMQANQDNEAAGCMAD 1213
>06_01_0065 +
549972-550770,551577-552190,552392-552544,552769-552885,
552972-553076,553269-553334,553430-553494,553577-553778,
554026-554169,554212-554340
Length = 797
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 190 DAVPSESDGLALVQKRRVILVLIHHRDEYEQALGTAS 80
DA+ S+ + L +RR++ L+ DEY Q +G+ S
Sbjct: 294 DAIASKRENLQREMERRIVTQLMTCMDEYHQQIGSGS 330
>08_02_0456 -
17362080-17364156,17364853-17364942,17372615-17373318,
17373421-17373451,17374366-17374448,17374517-17374640,
17376427-17376560
Length = 1080
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +1
Query: 211 GIPNGPAQRHGPG*KIARVQQNDQKLTDLNWNNIKNISDEKFEKLFEALKSNSHVEVLSL 390
GIPN P R +++ + ++ + L NNIK + D+K + E +++ +L
Sbjct: 633 GIPNVPIDRQKKVRRLSLLVNTEEYYSSLEENNIKYVLDKKEDDSNEQEDNSNGFHILKK 692
Query: 391 VNV 399
+N+
Sbjct: 693 LNL 695
>02_02_0454 +
10436491-10436820,10437487-10437570,10437667-10437797,
10437873-10437948,10438366-10438436,10438559-10438645,
10438725-10438797,10438881-10438948,10439020-10439088,
10439160-10439265,10439831-10439887,10440297-10440389
Length = 414
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 256 IARVQQNDQKLTDLNWNNIKNISDEKFEKL---FEALKSNSHVEVLSLVNVGLTD 411
I + QN + + DLN + KNISD+ + + +E LK + + L + GL +
Sbjct: 188 IRHIVQNCKHIVDLNLSGCKNISDKGMQLVADNYEGLKKLNITRCIKLTDDGLQE 242
>11_06_0513 + 24466131-24469487
Length = 1118
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = +1
Query: 283 KLTDLNWNNIKNISDEKFEKLFEALKSNSHVEVLSL-VNVGLTDRTAGA----LADALRH 447
KL L NI NIS+E EK+ L+ +E L+L N+ +R + + L D L
Sbjct: 807 KLKRLGLENIANISNEDAEKI--QLQKKHELEHLTLNCNMDAENRKSSSEVKELLDCLEP 864
Query: 448 NTALRVLSV 474
N L++L +
Sbjct: 865 NPGLKILEI 873
>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
7782225-7782324,7782720-7782801,7782928-7782940,
7783621-7783681
Length = 1433
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Frame = +1
Query: 367 SHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSVE-----TNFISPPAL 504
S +E LSL + LTD GALA L+ T+L+ LS+E T+F SP L
Sbjct: 978 SSIENLSLSSCNLTD---GALAVCLQGLTSLKWLSIERIMNLTSFPSPQVL 1025
>10_08_0637 - 19482088-19482108,19482280-19482881,19484611-19485397
Length = 469
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 596 DGDNSARRTESDPAASRAAPRVQRREAQG 682
DG ARR E+DPAA+ AA R + E G
Sbjct: 34 DGKPKARRREADPAAALAAARHEFGEHGG 62
>02_01_0120 + 884467-887649
Length = 1060
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Frame = +1
Query: 385 SLVNVGLTDRT-AGALADALRHNTALRVLSVETNFIS---PPAL 504
SLV + L AGAL D + T+L+VLS+ TN +S PP+L
Sbjct: 229 SLVELSLDGNAIAGALPDDVFGLTSLQVLSLHTNSLSGHLPPSL 272
>05_05_0273 - 23744218-23744342,23744431-23744521
Length = 71
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 116 MMNQDQYHASLLNKGQPVGLGWDGI 190
+M Q + + S N G P G GWDG+
Sbjct: 37 LMQQWRNYPSSWNSGDPCGGGWDGV 61
>03_03_0103 - 14442293-14442478,14442915-14442961,14443247-14443373
Length = 119
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -2
Query: 200 WLW*CRPIRVRRAGPCSEATRDTGPDSSSR 111
W CRP RA PC TR+ G S R
Sbjct: 8 WTTTCRPTAGGRATPCGRRTREGGSRRSLR 37
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +3
Query: 543 EEFRASNQRSQVLGNKIEMEITQLVEQNPTLLRLGLHLEYSDARHRV-ASHLQRNIDRIR 719
E+ R + R Q L K+ L+E+N L + L Y RH V A+ + R +
Sbjct: 61 EKQRKESSRLQALNRKLTAMNKLLMEENDRLQKQVSQLVYDHGRHGVAAAGMMRRVPAFP 120
Query: 720 QQA 728
QA
Sbjct: 121 PQA 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,783,158
Number of Sequences: 37544
Number of extensions: 333856
Number of successful extensions: 1397
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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