Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0152
(732 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97193-9|AAL13319.1| 401|Caenorhabditis elegans Tropomodulin pr... 71 8e-13
U97193-8|AAB52440.3| 392|Caenorhabditis elegans Tropomodulin pr... 71 8e-13
U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin pr... 60 1e-09
U41108-1|AAQ23120.1| 308|Caenorhabditis elegans Tropomodulin pr... 60 1e-09
Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical pr... 39 0.003
L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 31 0.84
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 31 0.84
AF067618-2|AAC19195.1| 920|Caenorhabditis elegans Nuclear hormo... 31 0.84
U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical p... 30 1.5
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 28 5.9
U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical pr... 28 5.9
U64849-7|AAC48048.1| 307|Caenorhabditis elegans Hypothetical pr... 28 5.9
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 28 5.9
>U97193-9|AAL13319.1| 401|Caenorhabditis elegans Tropomodulin
protein 1, isoform b protein.
Length = 401
Score = 70.9 bits (166), Expect = 8e-13
Identities = 29/63 (46%), Positives = 46/63 (73%)
Frame = +3
Query: 531 TNTVEEFRASNQRSQVLGNKIEMEITQLVEQNPTLLRLGLHLEYSDARHRVASHLQRNID 710
T ++ EF+A NQR VLGN++EM++ +E+N +LLR+G+ +ARHRV+ L+RN +
Sbjct: 329 TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEARHRVSEALERNYE 388
Query: 711 RIR 719
R+R
Sbjct: 389 RVR 391
Score = 69.3 bits (162), Expect = 3e-12
Identities = 35/104 (33%), Positives = 61/104 (58%)
Frame = +1
Query: 193 QSH*TQGIPNGPAQRHGPG*KIARVQQNDQKLTDLNWNNIKNISDEKFEKLFEALKSNSH 372
QS+ + +P+ P I R++++D L ++N NN+K +S E+ L EA ++ H
Sbjct: 216 QSYVPRIVPDEPDNDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKH 275
Query: 373 VEVLSLVNVGLTDRTAGALADALRHNTALRVLSVETNFISPPAL 504
+E SL N ++D A L + + + +LRVL+VE+NF++P L
Sbjct: 276 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 319
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +2
Query: 113 SMMNQDQYHASLLNKGQPVGLG--WDGITKATKPKVFPMDPPNDTD 244
+++NQ QY+ +L K Q G ++GI ++ P++ P +P NDTD
Sbjct: 187 NVLNQPQYYNALKGKTQDESTGTTFNGIMQSYVPRIVPDEPDNDTD 232
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/30 (46%), Positives = 23/30 (76%)
Frame = -3
Query: 112 DEYEQALGTASQEEIIDLAAILGFHSMMIQ 23
+E E AL TA +++++DLA ILG H+++ Q
Sbjct: 162 EELECALVTAPEKDLVDLAGILGMHNVLNQ 191
>U97193-8|AAB52440.3| 392|Caenorhabditis elegans Tropomodulin
protein 1, isoform a protein.
Length = 392
Score = 70.9 bits (166), Expect = 8e-13
Identities = 29/63 (46%), Positives = 46/63 (73%)
Frame = +3
Query: 531 TNTVEEFRASNQRSQVLGNKIEMEITQLVEQNPTLLRLGLHLEYSDARHRVASHLQRNID 710
T ++ EF+A NQR VLGN++EM++ +E+N +LLR+G+ +ARHRV+ L+RN +
Sbjct: 320 TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEARHRVSEALERNYE 379
Query: 711 RIR 719
R+R
Sbjct: 380 RVR 382
Score = 69.3 bits (162), Expect = 3e-12
Identities = 35/104 (33%), Positives = 61/104 (58%)
Frame = +1
Query: 193 QSH*TQGIPNGPAQRHGPG*KIARVQQNDQKLTDLNWNNIKNISDEKFEKLFEALKSNSH 372
QS+ + +P+ P I R++++D L ++N NN+K +S E+ L EA ++ H
Sbjct: 207 QSYVPRIVPDEPDNDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKH 266
Query: 373 VEVLSLVNVGLTDRTAGALADALRHNTALRVLSVETNFISPPAL 504
+E SL N ++D A L + + + +LRVL+VE+NF++P L
Sbjct: 267 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 310
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +2
Query: 113 SMMNQDQYHASLLNKGQPVGLG--WDGITKATKPKVFPMDPPNDTD 244
+++NQ QY+ +L K Q G ++GI ++ P++ P +P NDTD
Sbjct: 178 NVLNQPQYYNALKGKTQDESTGTTFNGIMQSYVPRIVPDEPDNDTD 223
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/30 (46%), Positives = 23/30 (76%)
Frame = -3
Query: 112 DEYEQALGTASQEEIIDLAAILGFHSMMIQ 23
+E E AL TA +++++DLA ILG H+++ Q
Sbjct: 153 EELECALVTAPEKDLVDLAGILGMHNVLNQ 182
>U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin
protein 2, isoform b protein.
Length = 639
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/79 (35%), Positives = 45/79 (56%)
Frame = +1
Query: 256 IARVQQNDQKLTDLNWNNIKNISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGALAD 435
I ++ ND L ++N NN+K ++L EAL N H E +SL N+GL D L
Sbjct: 91 IKKLLDNDPSLKEINLNNMKRTPVPAIKRLLEALAYNEHCERISLANMGLYDHDINVLVT 150
Query: 436 ALRHNTALRVLSVETNFIS 492
+ N A++ +++ETN++S
Sbjct: 151 VIEMNQAIKKVNLETNYLS 169
>U41108-1|AAQ23120.1| 308|Caenorhabditis elegans Tropomodulin
protein 2, isoform a protein.
Length = 308
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/79 (35%), Positives = 45/79 (56%)
Frame = +1
Query: 256 IARVQQNDQKLTDLNWNNIKNISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGALAD 435
I ++ ND L ++N NN+K ++L EAL N H E +SL N+GL D L
Sbjct: 91 IKKLLDNDPSLKEINLNNMKRTPVPAIKRLLEALAYNEHCERISLANMGLYDHDINVLVT 150
Query: 436 ALRHNTALRVLSVETNFIS 492
+ N A++ +++ETN++S
Sbjct: 151 VIEMNQAIKKVNLETNYLS 169
>Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/84 (32%), Positives = 40/84 (47%)
Frame = +1
Query: 256 IARVQQNDQKLTDLNWNNIKNISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGALAD 435
+A + K+ LN N N+ E +L AL SNSH+ L L N G+ A LA+
Sbjct: 370 LAEALIENTKIETLNIGN-NNLGVEGIARLKPALASNSHLHRLGLQNTGINCEGAIILAE 428
Query: 436 ALRHNTALRVLSVETNFISPPALV 507
+ N AL + + N I+ L+
Sbjct: 429 CIADNIALLRVDIRDNPIALAGLL 452
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 343 LFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSV 474
+++ + SNS +++L L N + D + D LRH A+ S+
Sbjct: 309 IYQLITSNSSLQLLDLRNNSIGDSGVRHICDGLRHREAVEKSSL 352
>Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/84 (32%), Positives = 40/84 (47%)
Frame = +1
Query: 256 IARVQQNDQKLTDLNWNNIKNISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGALAD 435
+A + K+ LN N N+ E +L AL SNSH+ L L N G+ A LA+
Sbjct: 370 LAEALIENTKIETLNIGN-NNLGVEGIARLKPALASNSHLHRLGLQNTGINCEGAIILAE 428
Query: 436 ALRHNTALRVLSVETNFISPPALV 507
+ N AL + + N I+ L+
Sbjct: 429 CIADNIALLRVDIRDNPIALAGLL 452
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 343 LFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSV 474
+++ + SNS +++L L N + D + D LRH A+ S+
Sbjct: 309 IYQLITSNSSLQLLDLRNNSIGDSGVRHICDGLRHREAVEKSSL 352
>Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/84 (32%), Positives = 40/84 (47%)
Frame = +1
Query: 256 IARVQQNDQKLTDLNWNNIKNISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGALAD 435
+A + K+ LN N N+ E +L AL SNSH+ L L N G+ A LA+
Sbjct: 370 LAEALIENTKIETLNIGN-NNLGVEGIARLKPALASNSHLHRLGLQNTGINCEGAIILAE 428
Query: 436 ALRHNTALRVLSVETNFISPPALV 507
+ N AL + + N I+ L+
Sbjct: 429 CIADNIALLRVDIRDNPIALAGLL 452
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 343 LFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSV 474
+++ + SNS +++L L N + D + D LRH A+ S+
Sbjct: 309 IYQLITSNSSLQLLDLRNNSIGDSGVRHICDGLRHREAVEKSSL 352
>Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/84 (32%), Positives = 40/84 (47%)
Frame = +1
Query: 256 IARVQQNDQKLTDLNWNNIKNISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGALAD 435
+A + K+ LN N N+ E +L AL SNSH+ L L N G+ A LA+
Sbjct: 370 LAEALIENTKIETLNIGN-NNLGVEGIARLKPALASNSHLHRLGLQNTGINCEGAIILAE 428
Query: 436 ALRHNTALRVLSVETNFISPPALV 507
+ N AL + + N I+ L+
Sbjct: 429 CIADNIALLRVDIRDNPIALAGLL 452
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 343 LFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSV 474
+++ + SNS +++L L N + D + D LRH A+ S+
Sbjct: 309 IYQLITSNSSLQLLDLRNNSIGDSGVRHICDGLRHREAVEKSSL 352
>L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
b protein.
Length = 926
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 373 VEVLSLVNVGLTDRTAGALADALRHNTALRVLSVETNFISPPALV 507
+E + L G+ D ALA+A R N LR++ + NF P +
Sbjct: 193 LEEIRLPQNGIRDDGIIALAEAFRMNKKLRIIDINDNFCCPEGAI 237
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
a protein.
Length = 960
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 373 VEVLSLVNVGLTDRTAGALADALRHNTALRVLSVETNFISPPALV 507
+E + L G+ D ALA+A R N LR++ + NF P +
Sbjct: 230 LEEIRLPQNGIRDDGIIALAEAFRMNKKLRIIDINDNFCCPEGAI 274
>AF067618-2|AAC19195.1| 920|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 266 protein.
Length = 920
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/56 (26%), Positives = 33/56 (58%)
Frame = +1
Query: 256 IARVQQNDQKLTDLNWNNIKNISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAG 423
+ ++ Q+D++L ++ +++ + IS+ + F ALK N VL+ +N+ + T G
Sbjct: 93 LKKITQDDRELLEMKYSSPEIISNCDYFHTFNALKENLAKNVLNKLNITESINTTG 148
>U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical
protein F41G3.3 protein.
Length = 577
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +1
Query: 328 EKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSVETNFISPP 498
E+ EKL K+ H EVL+ + +GLTDR + T++RV + S P
Sbjct: 464 EEAEKLLFYFKT--HKEVLNYLGIGLTDRLWKHIQKLPSFETSIRVFKKQDEISSKP 518
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 557 LQPEIASSR*QDRDGDNSARRTESDPAASRAAPRVQRREAQGRVASPTKHR*DTPASA 730
LQP+ S + DGD +A T++ PAA + R ++ + + K PA A
Sbjct: 239 LQPDAPSG--EKGDGDAAAATTDAAPAAEKKKKRQRKGNKEPTTTTEQKEETAAPAKA 294
>U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical
protein C14A11.6 protein.
Length = 597
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 253 KIARVQQNDQKLTDLNWNNIKNISDEKFEKLFEALKSNSHVEV 381
+IA++ ++ ++ W N+ N +DE + L+ K+ SH+E+
Sbjct: 11 EIAKIS-SEHEIILTGWKNV-NFTDENIKHLYNLFKTCSHLEI 51
>U64849-7|AAC48048.1| 307|Caenorhabditis elegans Hypothetical
protein K04A8.2 protein.
Length = 307
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +1
Query: 298 NWNNIKNISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSVE 477
NWN I + + EKL + H E LS+ T R G + ALR+L+VE
Sbjct: 107 NWNKISELMEYPKEKLADVA---YHTEALSVFYAMDTHRLDGMSGVVI--GRALRILTVE 161
Query: 478 TN 483
N
Sbjct: 162 YN 163
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 557 LQPEIASSR*QDRDGDNSARRTESDPAASRAAPRVQRREAQGRVASPTKHR*DTPASA 730
LQP+ S + DGD +A T++ PAA + R ++ + + K PA A
Sbjct: 239 LQPDAPSG--EKGDGDAAAATTDAAPAAEKKKKRQRKGNKEPTTTTEQKEETAAPAKA 294
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,191,630
Number of Sequences: 27780
Number of extensions: 254969
Number of successful extensions: 1089
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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