Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0152
(732 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g10510.1 68414.m01183 leucine-rich repeat family protein simi... 41 0.001
At3g63130.1 68416.m07090 RAN GTPase activating protein 1 (RanGAP... 33 0.26
At5g19320.1 68418.m02302 RAN GTPase activating protein 2 (RanGAP... 31 0.60
At2g02780.1 68415.m00221 leucine-rich repeat transmembrane prote... 29 2.4
At1g63640.2 68414.m07198 kinesin motor protein-related C-termina... 29 2.4
At1g63640.1 68414.m07197 kinesin motor protein-related C-termina... 29 2.4
At5g43400.1 68418.m05305 expressed protein strong similarity to ... 29 4.2
At1g79880.3 68414.m09332 La domain-containing protein contains P... 29 4.2
At1g79880.2 68414.m09331 La domain-containing protein contains P... 29 4.2
At1g79880.1 68414.m09333 La domain-containing protein contains P... 29 4.2
At1g10455.1 68414.m01177 hypothetical protein 29 4.2
At5g67550.1 68418.m08518 expressed protein 28 5.6
At5g25770.2 68418.m03059 expressed protein 28 5.6
At5g25770.1 68418.m03058 expressed protein 28 5.6
At4g31250.1 68417.m04436 leucine-rich repeat transmembrane prote... 28 5.6
At3g02840.1 68416.m00276 immediate-early fungal elicitor family ... 28 7.3
At5g41310.1 68418.m05020 kinesin motor protein-related 27 9.7
At4g12690.1 68417.m01993 expressed protein 27 9.7
At3g23300.1 68416.m02939 dehydration-responsive protein-related ... 27 9.7
>At1g10510.1 68414.m01183 leucine-rich repeat family protein similar
to ribonuclease inhibitor (GI:164639) [Sus scrofa
(pig)]; contains Pfam PF00560: Leucine Rich Repeat
domains
Length = 605
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/75 (32%), Positives = 39/75 (52%)
Frame = +1
Query: 265 VQQNDQKLTDLNWNNIKNISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGALADALR 444
V Q++ L LN + I DE + L L NS +E+L L + + D A +A+ L+
Sbjct: 221 VLQSNIMLKILNLSG-NPIGDEGAKTLCATLMENSSIEILQLNSTDIGDEGAKEIAELLK 279
Query: 445 HNTALRVLSVETNFI 489
N+ LR++ + N I
Sbjct: 280 RNSTLRIIELNNNMI 294
>At3g63130.1 68416.m07090 RAN GTPase activating protein 1 (RanGAP1)
contains Pfam PF00560: Leucine Rich Repeat domains;
identical to RAN GTPase activating protein 1
(GI:6708466)[Arabidopsis thaliana]
Length = 535
Score = 32.7 bits (71), Expect = 0.26
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 316 NISDEKFEKLFEAL-KSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSVETN 483
N+ DE E L EAL KS +EVL L +T ++ G LA + +L L++ N
Sbjct: 360 NLEDEGTEALSEALLKSAPSLEVLELAGNDITVKSTGNLAACIASKQSLAKLNLSEN 416
>At5g19320.1 68418.m02302 RAN GTPase activating protein 2 (RanGAP2)
identical to RAN GTPase activating protein 2 GI:6708468
from [Arabidopsis thaliana]
Length = 545
Score = 31.5 bits (68), Expect = 0.60
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 286 LTDLNWNNIKNISDEKFEKLFEAL-KSNSHVEVLSLVNVGLTDRTAGALADALRHNTALR 462
L+ LN ++ N EK + F AL KS S +E L L+N G++ A A+++ + LR
Sbjct: 216 LSSLNLSD--NALGEKGVRAFGALLKSLSSLEELYLMNDGISKEAAQAVSELIPSTENLR 273
Query: 463 VLSVETN 483
VL N
Sbjct: 274 VLHFHNN 280
>At2g02780.1 68415.m00221 leucine-rich repeat transmembrane protein
kinase, putative
Length = 753
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/86 (27%), Positives = 43/86 (50%)
Frame = +1
Query: 235 RHGPG*KIARVQQNDQKLTDLNWNNIKNISDEKFEKLFEALKSNSHVEVLSLVNVGLTDR 414
R P +I + + +LT + N +S F KLF L S ++ LSL ++G++
Sbjct: 63 RPSPSLRIICLHGHVTELT-VTGNRTSKLSGS-FHKLFTLLTQLSSLKTLSLTSLGISGS 120
Query: 415 TAGALADALRHNTALRVLSVETNFIS 492
+ + L + +L L++ +NFIS
Sbjct: 121 LSPKIITKL--SPSLESLNLSSNFIS 144
>At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal
region is similar to C-term region of kinesin motor
protein GB:AAB51397 (Mus musculus); contains Pfam
profile: PF00225 Kinesin motor domain
Length = 1065
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 376 EVLSLVNVGLTDRTAGALADALRHNTALRVLSV 474
+VL L+N+GL +RT GA A R + + VLSV
Sbjct: 646 DVLELMNIGLMNRTVGATALNERSSRSHCVLSV 678
>At1g63640.1 68414.m07197 kinesin motor protein-related C-terminal
region is similar to C-term region of kinesin motor
protein GB:AAB51397 (Mus musculus); contains Pfam
profile: PF00225 Kinesin motor domain
Length = 1064
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 376 EVLSLVNVGLTDRTAGALADALRHNTALRVLSV 474
+VL L+N+GL +RT GA A R + + VLSV
Sbjct: 646 DVLELMNIGLMNRTVGATALNERSSRSHCVLSV 678
>At5g43400.1 68418.m05305 expressed protein strong similarity to
unknown protein (emb|CAB86628.1)
Length = 655
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 295 LNWNNIKNISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGAL 429
L +N + +++ + ++KLFE S E L V G AGAL
Sbjct: 347 LKYNRVPSVAMKNYKKLFEEHDSERFTEFLEDVKSGKKKIAAGAL 391
>At1g79880.3 68414.m09332 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 357
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 268 QQNDQKLTDLNWNNIKNISDEKFEKLFEALKSNSHVE 378
+ N +L WNN ++S E + LF+ S H+E
Sbjct: 218 KDNTDQLVVPPWNNSNSVSSEVLKDLFQRFGSVEHIE 254
>At1g79880.2 68414.m09331 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 345
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 268 QQNDQKLTDLNWNNIKNISDEKFEKLFEALKSNSHVE 378
+ N +L WNN ++S E + LF+ S H+E
Sbjct: 218 KDNTDQLVVPPWNNSNSVSSEVLKDLFQRFGSVEHIE 254
>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 399
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 268 QQNDQKLTDLNWNNIKNISDEKFEKLFEALKSNSHVE 378
+ N +L WNN ++S E + LF+ S H+E
Sbjct: 272 KDNTDQLVVPPWNNSNSVSSEVLKDLFQRFGSVEHIE 308
>At1g10455.1 68414.m01177 hypothetical protein
Length = 152
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 137 HASLLNKGQPVGLGWDGITKATKPKVF 217
+A +LN G +GL WD +T+ K K F
Sbjct: 102 NAKVLNTGDHIGLFWDKLTREVKFKHF 128
>At5g67550.1 68418.m08518 expressed protein
Length = 439
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 642 LGLHLEYSDARHRVASHLQRNIDR 713
LGL++ +SD R RV+S +R +DR
Sbjct: 85 LGLYVAFSDKRRRVSSTRRRYLDR 108
>At5g25770.2 68418.m03059 expressed protein
Length = 418
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 684 RPCASRRCTRGAARDAAGSDSVRRAELSPSRSCYRELAISGWRPG 550
RP +RG A G DS E + ++ YR+ IS WR G
Sbjct: 174 RPWLEAYASRGYV--AIGLDSRYHGERADCKTAYRDALISSWRNG 216
>At5g25770.1 68418.m03058 expressed protein
Length = 360
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 684 RPCASRRCTRGAARDAAGSDSVRRAELSPSRSCYRELAISGWRPG 550
RP +RG A G DS E + ++ YR+ IS WR G
Sbjct: 116 RPWLEAYASRGYV--AIGLDSRYHGERADCKTAYRDALISSWRNG 158
>At4g31250.1 68417.m04436 leucine-rich repeat transmembrane protein
kinase, putative receptor kinase, Petunia inflata,
Patchx:G498278
Length = 676
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = -3
Query: 277 HFVALERSFIRVRVVGRVHWEYLGFSGFGDAVPSE-SDGLALVQKRRVILVLIHHRDEYE 101
HFV ++ ++ + R E LG GFG + + S G A+V KR + I + Y+
Sbjct: 350 HFVRNDQERFTLQDMLRASAEVLGSGGFGSSYKAALSSGRAVVVKRFRFMSNIGREEFYD 409
Query: 100 --QALGTASQEEIIDLAA 53
+ +G S ++ L A
Sbjct: 410 HMKKIGRLSHPNLLPLIA 427
>At3g02840.1 68416.m00276 immediate-early fungal elicitor family
protein similar to immediate-early fungal elicitor
protein CMPG1 (GI:14582200) [Petroselinum crispum]
Length = 379
Score = 27.9 bits (59), Expect = 7.3
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +1
Query: 253 KIARVQQ-NDQKLTDLNWNNIKNISDEKFEK--LFEALKSNSHVEVLSLVNVGLTDRTAG 423
KI RV Q + W KN D + + L EAL+ + ++L L+ VG D+T
Sbjct: 285 KILRVSDLATQCSVSILWKLWKNKKDGECDDRLLVEALQVGAFEKLLVLLQVGCEDKTKE 344
Query: 424 ALADALRHNTALRVLSVETNFI 489
++ LR+ R +TN +
Sbjct: 345 KASELLRNLNRCRNEIEKTNCV 366
>At5g41310.1 68418.m05020 kinesin motor protein-related
Length = 961
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 376 EVLSLVNVGLTDRTAGALADALRHNTALRVLSV 474
+VL L+N+GL +RT GA + + + VLSV
Sbjct: 585 DVLELMNIGLMNRTVGATTLNEKSSRSHSVLSV 617
>At4g12690.1 68417.m01993 expressed protein
Length = 285
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = -3
Query: 226 VHWEYLGFSGFGDAVPSESDGLALVQKRRVILVLIHHRDEYEQALGTASQEEIIDLA 56
V+W++ G PS +ALV + V+L+L H+ + + T S+ ++D A
Sbjct: 97 VYWDFRSAKFNGGPEPSSDFYVALVSEEEVVLLLGDHKKKAFKR--TKSRPSLVDAA 151
>At3g23300.1 68416.m02939 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 611
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 35 RVESEDGRKINDLLL*CSAESLFVFISMMNQDQYHASLLNKGQPVGLGWD 184
R SE G+K ++L C A + VF+ + H + + G+ +GLG D
Sbjct: 2 RGRSEGGKKKPVIVLLCVASVVLVFVYLFFGSSNHKA-IEYGRKLGLGGD 50
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,647,071
Number of Sequences: 28952
Number of extensions: 236926
Number of successful extensions: 911
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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