Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0151
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    31   0.22 
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    28   1.5  
SPBC21B10.12 |rec6||meiotic recombination protein Rec6|Schizosac...    26   4.7  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   6.2  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.2  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    25   8.2  

>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 600 NPATLIVSNSPLGRNTCKLIFISSLIFVKNIYPSSS 493
           NP TL  S    G + C++++ SSL+   NI P S+
Sbjct: 31  NPFTLCFSKKANGASICEMLYESSLLAFVNISPEST 66


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 611 TTVDNLNDIVYLATDNGVYK 670
           T +D LND  Y   +NGVYK
Sbjct: 166 TKIDELNDYFYDTVNNGVYK 185


>SPBC21B10.12 |rec6||meiotic recombination protein
           Rec6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 351 SPVMTRESLIKQINTQHFCANILKINNFYYSLAERKN 461
           S ++TRESL K     HF   + K     Y+   RKN
Sbjct: 55  SRILTRESLDKSFEQSHFQLLMYKKCKLIYTRTLRKN 91


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 2  VWTPHIVLGLPYLIQCIESN 61
          VW       L YL+QCIESN
Sbjct: 3  VWESQHFSALLYLLQCIESN 22


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 214 YSLSVTINYTVPRILNNDYISFNH 285
           Y+ S   N+    +LNN+Y SF H
Sbjct: 37  YASSSNRNFVPQNVLNNEYQSFQH 60


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 242 PYLVY*IMITFHLITFLDGWMDFVNIF 322
           PY+ Y  +I   LITF +G+  F++ F
Sbjct: 455 PYIAYASLIFTGLITFFNGYNAFIHGF 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,742
Number of Sequences: 5004
Number of extensions: 50997
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)