Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0151
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)                 29   2.8  
SB_15943| Best HMM Match : Pox_A32 (HMM E-Value=0.027)                 29   3.8  
SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)                 29   5.0  
SB_16972| Best HMM Match : Ribosomal_60s (HMM E-Value=0.51)            29   5.0  
SB_29928| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)            28   8.7  
SB_21926| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 344 GFKP-GYDEGEFDKANKHTTFLREYTQDQQFLLFAGGEKEF 463
           GF P G  EGEFD+ + H +  +  T D+ +   A  ++ F
Sbjct: 16  GFVPAGTGEGEFDQTSWHKSVDKRSTSDEAYFAVAAAQEAF 56


>SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)
          Length = 820

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 584 IKVAGLGQSTTVDNLNDIVYLAT-DNGVYKYQDD 682
           I V GLG+S  +DNLN +  +A+ +NG +   +D
Sbjct: 353 INVYGLGESLNIDNLNRLKQIASLNNGTFTQIND 386


>SB_15943| Best HMM Match : Pox_A32 (HMM E-Value=0.027)
          Length = 804

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 296 GWMDFVNIFCMPYVYNGFKPGYDEGE 373
           G  D++ + C P+VYN    G+ EG+
Sbjct: 302 GKFDYIVLMCPPFVYNKTYDGFGEGD 327


>SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 815

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 296 GWMDFVNIFCMPYVYNGFKPGYDEGE 373
           G  D++ I C  +VYN    G+DEG+
Sbjct: 448 GKFDYIVIVCPTFVYNKTYEGFDEGD 473


>SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)
          Length = 1736

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 296  GWMDFVNIFCMPYVYNGFKPGYDEGE 373
            G  D++ + C  +VYN    G+DEG+
Sbjct: 1138 GKFDYIVLLCPTFVYNKTYDGFDEGD 1163


>SB_16972| Best HMM Match : Ribosomal_60s (HMM E-Value=0.51)
          Length = 1275

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 293 DGWMDFVNIFCMPYVYNGFKPGYDEGE 373
           DG  D++ + C  +VYN    G+ EG+
Sbjct: 712 DGQFDYIVLMCPTFVYNKTYDGFGEGD 738


>SB_29928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 421 LSIFAQKCC--VFICFIKLSLVITGLESVIDVRHT 323
           L IF   C   VF+C ++ S V+TG ES +  R+T
Sbjct: 159 LQIFITICKDRVFMCPVRTSAVVTGEESTLSSRNT 193


>SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)
          Length = 356

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +2

Query: 296 GWMDFVNIFCMPYVYNGFKPGYDEGEFDKANKHTTFLREYTQDQQFLLFAGGEK 457
           G  D++ + C  +VYN    G+ EG+    N+      E  Q  + L F  G K
Sbjct: 34  GKFDYIVLVCPTFVYNKTYDGFGEGD----NRLFVIAPEAGQIDKLLRFVSGSK 83


>SB_21926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 330 LTSITDSSPVMTRESLIKQINTQHFCANILKINNF 434
           L S T+SSP+++R+   KQ+  ++F       N F
Sbjct: 62  LMSCTESSPILSRQRRTKQVEKKYFSTASKSGNRF 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,892,978
Number of Sequences: 59808
Number of extensions: 355706
Number of successful extensions: 920
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)