Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0151
(717 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X54315-1|CAA38213.1| 906|Homo sapiens protein ( Human mRNA for ... 34 0.44
S42303-1|AAB22854.1| 905|Homo sapiens N-cadherin protein. 34 0.44
M34064-1|AAA03236.1| 747|Homo sapiens NCAD protein. 34 0.44
BC036470-1|AAH36470.1| 906|Homo sapiens cadherin 2, type 1, N-c... 34 0.44
X57548-1|CAA40773.1| 748|Homo sapiens N-cadherin protein. 34 0.58
L34059-1|AAA35627.1| 916|Homo sapiens cadherin-4 protein. 33 1.4
BC112150-1|AAI12151.1| 916|Homo sapiens cadherin 4, type 1, pre... 31 4.1
BC101651-1|AAI01652.1| 916|Homo sapiens cadherin 4, type 1, R-c... 31 4.1
AL365401-1|CAC26840.2| 916|Homo sapiens cadherin 4, type 1, R-c... 31 4.1
AL365229-1|CAI16510.1| 916|Homo sapiens cadherin 4, type 1, R-c... 31 4.1
AL162457-1|CAH73749.1| 916|Homo sapiens cadherin 4, type 1, R-c... 31 4.1
AL109911-1|CAI19181.1| 916|Homo sapiens cadherin 4, type 1, R-c... 31 4.1
AK091496-1|BAC03677.1| 824|Homo sapiens protein ( Homo sapiens ... 31 4.1
>X54315-1|CAA38213.1| 906|Homo sapiens protein ( Human mRNA for
N-cadherin. ).
Length = 906
Score = 34.3 bits (75), Expect = 0.44
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +2
Query: 509 IFFTKISEEMKMSLQVLRPSGEFETIKVAGLGQSTTVDNLNDIVYLATDNGVYKYQDDGS 688
I +TK+S+ L++ +G+ TI V +N+ + +LA+DNG+ G+
Sbjct: 532 IRYTKLSDPANW-LKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGT 590
Query: 689 IQLY 700
+Q+Y
Sbjct: 591 LQIY 594
>S42303-1|AAB22854.1| 905|Homo sapiens N-cadherin protein.
Length = 905
Score = 34.3 bits (75), Expect = 0.44
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +2
Query: 509 IFFTKISEEMKMSLQVLRPSGEFETIKVAGLGQSTTVDNLNDIVYLATDNGVYKYQDDGS 688
I +TK+S+ L++ +G+ TI V +N+ + +LA+DNG+ G+
Sbjct: 531 IRYTKLSDPANW-LKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGT 589
Query: 689 IQLY 700
+Q+Y
Sbjct: 590 LQIY 593
>M34064-1|AAA03236.1| 747|Homo sapiens NCAD protein.
Length = 747
Score = 34.3 bits (75), Expect = 0.44
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +2
Query: 509 IFFTKISEEMKMSLQVLRPSGEFETIKVAGLGQSTTVDNLNDIVYLATDNGVYKYQDDGS 688
I +TK+S+ L++ +G+ TI V +N+ + +LA+DNG+ G+
Sbjct: 373 IRYTKLSDPANW-LKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGT 431
Query: 689 IQLY 700
+Q+Y
Sbjct: 432 LQIY 435
>BC036470-1|AAH36470.1| 906|Homo sapiens cadherin 2, type 1,
N-cadherin (neuronal) protein.
Length = 906
Score = 34.3 bits (75), Expect = 0.44
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +2
Query: 509 IFFTKISEEMKMSLQVLRPSGEFETIKVAGLGQSTTVDNLNDIVYLATDNGVYKYQDDGS 688
I +TK+S+ L++ +G+ TI V +N+ + +LA+DNG+ G+
Sbjct: 532 IRYTKLSDPANW-LKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGT 590
Query: 689 IQLY 700
+Q+Y
Sbjct: 591 LQIY 594
>X57548-1|CAA40773.1| 748|Homo sapiens N-cadherin protein.
Length = 748
Score = 33.9 bits (74), Expect = 0.58
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +2
Query: 515 FTKISEEMKMSLQVLRPSGEFETIKVAGLGQSTTVDNLNDIVYLATDNGVYKYQDDGSIQ 694
+TK+S+ L++ +G+ TI V +N+ + +LA+DNG+ G++Q
Sbjct: 376 YTKLSDPANW-LKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQ 434
Query: 695 LY 700
+Y
Sbjct: 435 IY 436
>L34059-1|AAA35627.1| 916|Homo sapiens cadherin-4 protein.
Length = 916
Score = 32.7 bits (71), Expect = 1.4
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +2
Query: 515 FTKISEEMKMSLQVLRPSGEFETIKVAGLGQSTTVDNLNDIVYLATDNGVYKYQDDGSIQ 694
++K+S+ L + +G+ T+ V T +N+ + +LA DNG+ G++Q
Sbjct: 544 YSKLSDPASW-LHINATNGQITTVAVLDRESLYTKNNVYEATFLAADNGIPPASGTGTLQ 602
Query: 695 LY 700
+Y
Sbjct: 603 IY 604
>BC112150-1|AAI12151.1| 916|Homo sapiens cadherin 4, type 1,
preproprotein protein.
Length = 916
Score = 31.1 bits (67), Expect = 4.1
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +2
Query: 515 FTKISEEMKMSLQVLRPSGEFETIKVAGLGQSTTVDNLNDIVYLATDNGVYKYQDDGSIQ 694
++K+S+ L + +G+ T V T +N+ + +LA DNG+ G++Q
Sbjct: 544 YSKLSDPASW-LHINATNGQITTAAVLDRESLYTKNNVYEATFLAADNGIPPASGTGTLQ 602
Query: 695 LY 700
+Y
Sbjct: 603 IY 604
>BC101651-1|AAI01652.1| 916|Homo sapiens cadherin 4, type 1,
R-cadherin (retinal) protein.
Length = 916
Score = 31.1 bits (67), Expect = 4.1
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +2
Query: 515 FTKISEEMKMSLQVLRPSGEFETIKVAGLGQSTTVDNLNDIVYLATDNGVYKYQDDGSIQ 694
++K+S+ L + +G+ T V T +N+ + +LA DNG+ G++Q
Sbjct: 544 YSKLSDPASW-LHINATNGQITTAAVLDRESLYTKNNVYEATFLAADNGIPPASGTGTLQ 602
Query: 695 LY 700
+Y
Sbjct: 603 IY 604
>AL365401-1|CAC26840.2| 916|Homo sapiens cadherin 4, type 1,
R-cadherin (retinal) protein.
Length = 916
Score = 31.1 bits (67), Expect = 4.1
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +2
Query: 515 FTKISEEMKMSLQVLRPSGEFETIKVAGLGQSTTVDNLNDIVYLATDNGVYKYQDDGSIQ 694
++K+S+ L + +G+ T V T +N+ + +LA DNG+ G++Q
Sbjct: 544 YSKLSDPASW-LHINATNGQITTAAVLDRESLYTKNNVYEATFLAADNGIPPASGTGTLQ 602
Query: 695 LY 700
+Y
Sbjct: 603 IY 604
>AL365229-1|CAI16510.1| 916|Homo sapiens cadherin 4, type 1,
R-cadherin (retinal) protein.
Length = 916
Score = 31.1 bits (67), Expect = 4.1
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +2
Query: 515 FTKISEEMKMSLQVLRPSGEFETIKVAGLGQSTTVDNLNDIVYLATDNGVYKYQDDGSIQ 694
++K+S+ L + +G+ T V T +N+ + +LA DNG+ G++Q
Sbjct: 544 YSKLSDPASW-LHINATNGQITTAAVLDRESLYTKNNVYEATFLAADNGIPPASGTGTLQ 602
Query: 695 LY 700
+Y
Sbjct: 603 IY 604
>AL162457-1|CAH73749.1| 916|Homo sapiens cadherin 4, type 1,
R-cadherin (retinal) protein.
Length = 916
Score = 31.1 bits (67), Expect = 4.1
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +2
Query: 515 FTKISEEMKMSLQVLRPSGEFETIKVAGLGQSTTVDNLNDIVYLATDNGVYKYQDDGSIQ 694
++K+S+ L + +G+ T V T +N+ + +LA DNG+ G++Q
Sbjct: 544 YSKLSDPASW-LHINATNGQITTAAVLDRESLYTKNNVYEATFLAADNGIPPASGTGTLQ 602
Query: 695 LY 700
+Y
Sbjct: 603 IY 604
>AL109911-1|CAI19181.1| 916|Homo sapiens cadherin 4, type 1,
R-cadherin (retinal) protein.
Length = 916
Score = 31.1 bits (67), Expect = 4.1
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +2
Query: 515 FTKISEEMKMSLQVLRPSGEFETIKVAGLGQSTTVDNLNDIVYLATDNGVYKYQDDGSIQ 694
++K+S+ L + +G+ T V T +N+ + +LA DNG+ G++Q
Sbjct: 544 YSKLSDPASW-LHINATNGQITTAAVLDRESLYTKNNVYEATFLAADNGIPPASGTGTLQ 602
Query: 695 LY 700
+Y
Sbjct: 603 IY 604
>AK091496-1|BAC03677.1| 824|Homo sapiens protein ( Homo sapiens
cDNA FLJ34177 fis, clone FCBBF3016451, highly similar to
RETINAL-CADHERIN PRECURSOR. ).
Length = 824
Score = 31.1 bits (67), Expect = 4.1
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +2
Query: 515 FTKISEEMKMSLQVLRPSGEFETIKVAGLGQSTTVDNLNDIVYLATDNGVYKYQDDGSIQ 694
++K+S+ L + +G+ T V T +N+ + +LA DNG+ G++Q
Sbjct: 452 YSKLSDPASW-LHINATNGQITTAAVLDRESLYTKNNVYEATFLAADNGIPPASGTGTLQ 510
Query: 695 LY 700
+Y
Sbjct: 511 IY 512
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,232,386
Number of Sequences: 237096
Number of extensions: 1663983
Number of successful extensions: 2585
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2585
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -