Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0150
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   1.8  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    27   1.8  
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    27   2.4  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    26   4.1  
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    25   9.5  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.5  

>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 488 HYILSITSHITFGYSLAYLASAFILYVYVTSKY 390
           H+I+ + S I FG+SL ++   F+ Y Y+   Y
Sbjct: 438 HWIVPLISSIFFGWSLLFV--FFVSYNYIIDSY 468


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 533 TLILKMLYLFVSLLYHYILSITSHITFGYSLAYLAS-AFILYVYVT 399
           T +++ L+ F + +  Y    T H T GYS+  L S A I+Y Y T
Sbjct: 95  TTVIQALF-FSNSITEYARYATGHGTSGYSIKKLISAASIIYGYTT 139


>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -2

Query: 518 MLYLFVSLLYHYILSITSHITFGYS-LAYLASAFILYVYVTSKYLE 384
           +L   + L++H I S++  + +  + L Y+A +FI++ +VT    E
Sbjct: 50  VLIAALRLIFHAIPSVSRELAWTLTNLTYMAGSFIMFHWVTGTPFE 95


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 479 LSITSHITFGYSLAYLASAFILYVYVT 399
           LSI+    F  S AYLA   +LY Y+T
Sbjct: 558 LSISLAAPFTASSAYLAGTVLLYHYIT 584


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 393 IFRDVYCFLYIIVSVVW 343
           +FR+V+CF Y +V V+W
Sbjct: 154 LFREVFCFTYGVV-VLW 169


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 243 CVRDFHNVSLLMAHCSNAYK 302
           C+ D+HN   L    SNAY+
Sbjct: 73  CIMDYHNDLFLTYSLSNAYR 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,133
Number of Sequences: 5004
Number of extensions: 37595
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)