Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0150
         (543 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          30   1.1  
SB_19355| Best HMM Match : MFS_1 (HMM E-Value=1.8e-22)                 29   1.9  
SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         28   4.3  
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)                      28   4.3  
SB_13459| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  

>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = -2

Query: 527  ILKMLYLFVSLLYHYILSITSH------ITFGYSLAYLASAFILYVYVTSKYLETFT 375
            I+   Y FV + +HYI SI +H      IT  YS   +   +I  ++    +  T T
Sbjct: 1103 IITYHYFFVIITHHYIFSIFTHHYFFSIITHHYSFVIITYHYIFSIFTHHYFFSTIT 1159



 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 533 TLILKMLYLFVSLLYHYILSITSH 462
           +L+L   Y+F ++ +HYI SI +H
Sbjct: 804 SLLLTHHYIFSTITHHYIFSIITH 827


>SB_19355| Best HMM Match : MFS_1 (HMM E-Value=1.8e-22)
          Length = 572

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
 Frame = -2

Query: 536 VTLILKMLYLFVSLLYHYILSITS-HITFGY------SLAYLASAFILYVYVTSK 393
           +  +  +L++  SL+  Y+ SI   + TFG+      SL Y +S F+L  Y T K
Sbjct: 46  IACVGSLLFMTASLITSYMSSIIPMYFTFGFMGGFGFSLMYFSSLFVLMQYFTDK 100


>SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 874

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 156 VFYKY-NNVLKGY*SIFKKSYYIPIYKKGQCVRDFHNVSLLMAHCSNAYKSN 308
           + Y+Y NN L  Y + F+K   IP+  +    +DF NV+     C    K N
Sbjct: 27  ILYEYWNNALSQYSASFQKGTPIPVIVRN---KDFQNVNNTNKKCCPGIKDN 75


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -2

Query: 494 LYHYILSITSHITFGYSLAYLASAFILYVYVTSKYLETFTVFYT**YLWSGANRVK 327
           LY Y+ +    I   YS   L  +FILY  V + Y    T+F     L    +R+K
Sbjct: 623 LYTYMYNTMRSIIHQYSFGRLRYSFILYGDVPATYYSFDTIFPNKEILLRAVSRIK 678


>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
          Length = 661

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 515 LYLFVSLLYH--YILSITSHITFGYSLAYLASAFILYVYVTSKYLETFTVFYT 363
           LY    +LY   Y+L  T+++ +  +    A+ ++LY    + Y  T+ ++ T
Sbjct: 525 LYATTYVLYATTYVLYATTYVLYATTYVLYATTYVLYATTYALYATTYVLYAT 577


>SB_13459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -1

Query: 510 SICKFALSLYFVNHIAHHIRLFVSLSCFGF--YIICLCYK*IFRDVYCFLYIIVSVV 346
           +I   ALS+       HHI   VS+  F F   +I  CY  I R  Y  +  I ++V
Sbjct: 128 AITGVALSMVEDGKANHHIHAVVSIFAFFFPLLVISFCYSNITRAAYRHIRNIAALV 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,309,391
Number of Sequences: 59808
Number of extensions: 234332
Number of successful extensions: 426
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)