Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0148
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    60   3e-10
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      28   1.00 
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni...    26   4.0  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   5.3  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    25   9.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.3  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   9.3  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 12  GMDEMEFTEAESNMNDLVSEYQQYQEA 92
           GMDEMEFTEAESNMNDLVSEYQQYQEA
Sbjct: 402 GMDEMEFTEAESNMNDLVSEYQQYQEA 428


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 293 KLPVMTNYLNEHNLFNTFLDIPPGLVE 373
           K+    ++L EHN+FNTFL    G+V+
Sbjct: 577 KITDCLSFLLEHNIFNTFLVYNEGIVK 603


>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
           Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 435 CTYVNKKCLF*-ISLYKFQI*LSTRPGGISRNVLNRL 328
           C +V K  LF  + +Y     L   PGG+   VLNR+
Sbjct: 209 CKFVGKVSLFTTLIVYSLYDSLHPSPGGLKHQVLNRI 245


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 450 ADQNSIPTNADSTQTPVPFCFVAQSV*SLDVAMNAKRL 563
           AD  + P + D+ + P+P   V  SV + D+   AKR+
Sbjct: 641 ADALTKPPSLDAVKEPIPVPSVETSVVAQDLTHKAKRI 678


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = +1

Query: 430 CAAETKWRIKIRYLPTLIQRRHLCHFVLLHRVYKVWMLP 546
           C  + + R+K +++ +L ++    HF+  H +  + +LP
Sbjct: 63  CRLKIRCRLKKKFIKSLSKKIISYHFISFHTIVVLLLLP 101


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 468  VSNFDPPFCFCCTYVNKK 415
            VSN  PPF  C TY+  K
Sbjct: 3032 VSNIGPPFPNCSTYILSK 3049


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 254 VRHAF*LLTDSTTKLPVMTNYLNEHNLFNTFLD 352
           + H    L+D   KL   T  +NEHN  N FLD
Sbjct: 67  IDHGKSTLSDCILKL---TGVINEHNFRNQFLD 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,799
Number of Sequences: 5004
Number of extensions: 44653
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)