Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0148
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 61 8e-10
03_01_0034 + 318432-318825,318902-319851 61 8e-10
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 61 8e-10
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 61 8e-10
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 60 2e-09
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 60 2e-09
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 60 2e-09
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 60 2e-09
10_02_0070 - 4919843-4919913,4921086-4921455 31 0.78
02_05_1127 + 34292894-34293284,34293948-34295443 30 1.4
07_01_0013 - 99952-100413,100534-100704 29 2.4
03_02_0943 + 12598616-12598789,12599790-12601250 29 4.1
02_05_1137 - 34372803-34372869,34373088-34373229,34373334-343734... 29 4.1
01_06_1560 + 38251268-38251471,38251567-38251672,38251992-382522... 28 5.5
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 60.9 bits (141), Expect = 8e-10
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = +3
Query: 12 GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
GMDEMEFTEAESNMNDLVSEYQQYQ+AT
Sbjct: 582 GMDEMEFTEAESNMNDLVSEYQQYQDAT 609
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 60.9 bits (141), Expect = 8e-10
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = +3
Query: 12 GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
GMDEMEFTEAESNMNDLVSEYQQYQ+AT
Sbjct: 402 GMDEMEFTEAESNMNDLVSEYQQYQDAT 429
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 60.9 bits (141), Expect = 8e-10
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = +3
Query: 12 GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
GMDEMEFTEAESNMNDLVSEYQQYQ+AT
Sbjct: 423 GMDEMEFTEAESNMNDLVSEYQQYQDAT 450
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 60.9 bits (141), Expect = 8e-10
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = +3
Query: 12 GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
GMDEMEFTEAESNMNDLVSEYQQYQ+AT
Sbjct: 402 GMDEMEFTEAESNMNDLVSEYQQYQDAT 429
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/28 (92%), Positives = 28/28 (100%)
Frame = +3
Query: 12 GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
GMDEMEFTEAESNMNDLV+EYQQYQ+AT
Sbjct: 402 GMDEMEFTEAESNMNDLVAEYQQYQDAT 429
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/28 (92%), Positives = 28/28 (100%)
Frame = +3
Query: 12 GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
GMDEMEFTEAESNMNDLV+EYQQYQ+AT
Sbjct: 402 GMDEMEFTEAESNMNDLVAEYQQYQDAT 429
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/28 (92%), Positives = 28/28 (100%)
Frame = +3
Query: 12 GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
GMDEMEFTEAESNMNDLV+EYQQYQ+AT
Sbjct: 418 GMDEMEFTEAESNMNDLVAEYQQYQDAT 445
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/28 (92%), Positives = 28/28 (100%)
Frame = +3
Query: 12 GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
GMDEMEFTEAESNMNDLV+EYQQYQ+AT
Sbjct: 402 GMDEMEFTEAESNMNDLVAEYQQYQDAT 429
>10_02_0070 - 4919843-4919913,4921086-4921455
Length = 146
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 129 PALRQTLRPRRRWPPGTVGTRRQGRSCCSQPR*TPSRPCL 10
PA+ + + +PPG +R R+CCS+ R TP P L
Sbjct: 58 PAIEARSQAKGMFPPGQTRSRSASRTCCSRRR-TPLCPWL 96
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 120 RQTLRPRRRWPPGTVGTRRQGRS 52
R T +P+RRWPPG+ G +G S
Sbjct: 83 RATGQPKRRWPPGSSGGGARGGS 105
>07_01_0013 - 99952-100413,100534-100704
Length = 210
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = -1
Query: 135 PAPALRQTLRPR----RRWPPGTVGTRRQGRSCCSQPR*TPSRPCLA 7
PA A T+ P RRWPP R G + S P P RPC A
Sbjct: 81 PASAALGTIAPSSRSPRRWPPTAADATRAGLAQSSVP---PCRPCSA 124
>03_02_0943 + 12598616-12598789,12599790-12601250
Length = 544
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 330 ICSIHSLIFHQASLRARSEICKG*SKIDTFYLHMCSRNKMADQNS 464
+ I +L+ ++S S +C G + Y +CS+ + AD+NS
Sbjct: 309 LAEIKALLSSESSSECGSSVCDGVTLSAEEYFTLCSKAQEADENS 353
>02_05_1137 -
34372803-34372869,34373088-34373229,34373334-34373403,
34373521-34373823,34374215-34374280,34374425-34374490,
34374584-34374682,34376153-34376310,34376951-34377039,
34377209-34377591
Length = 480
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = -1
Query: 132 APALRQTLRPRRRWPPGTVGTRRQGRSCCS 43
+PA RQ L R+ PG G RRQGR C S
Sbjct: 19 SPAWRQELA--RQESPGVAGGRRQGRWCRS 46
>01_06_1560 +
38251268-38251471,38251567-38251672,38251992-38252203,
38252306-38252512,38253327-38254694
Length = 698
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 528 IHSVQQNKMAQVSALNQRW*VSNFDPPFCFCCTYVNKKC 412
IHS + + L +W +S P F +YV KKC
Sbjct: 307 IHSSRDELEQALELLQPQWVISTTPPCFAMELSYVKKKC 345
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,139,415
Number of Sequences: 37544
Number of extensions: 285114
Number of successful extensions: 670
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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