Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0148
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)                     61   9e-10
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)                     61   9e-10
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)                     61   9e-10
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)                 56   2e-08
SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28)             56   2e-08
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)                     36   0.004
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)                   32   0.34 
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)                 29   3.2  
SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)              28   7.4  

>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 446

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 27/28 (96%), Positives = 28/28 (100%)
 Frame = +3

Query: 12  GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
           GMDEMEFTEAESNMNDLVSEYQQYQ+AT
Sbjct: 402 GMDEMEFTEAESNMNDLVSEYQQYQDAT 429


>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 391

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 27/28 (96%), Positives = 28/28 (100%)
 Frame = +3

Query: 12  GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
           GMDEMEFTEAESNMNDLVSEYQQYQ+AT
Sbjct: 347 GMDEMEFTEAESNMNDLVSEYQQYQDAT 374


>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 446

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 27/28 (96%), Positives = 28/28 (100%)
 Frame = +3

Query: 12  GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
           GMDEMEFTEAESNMNDLVSEYQQYQ+AT
Sbjct: 402 GMDEMEFTEAESNMNDLVSEYQQYQDAT 429


>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
          Length = 747

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 24/27 (88%), Positives = 27/27 (100%)
 Frame = +3

Query: 12  GMDEMEFTEAESNMNDLVSEYQQYQEA 92
           GMDEMEFTEAESNM+DL++EYQQYQEA
Sbjct: 167 GMDEMEFTEAESNMHDLIAEYQQYQEA 193


>SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28)
          Length = 271

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 24/27 (88%), Positives = 27/27 (100%)
 Frame = +3

Query: 12  GMDEMEFTEAESNMNDLVSEYQQYQEA 92
           GMDEMEFTEAESNM+DL++EYQQYQEA
Sbjct: 229 GMDEMEFTEAESNMHDLIAEYQQYQEA 255


>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 629

 Score = 35.9 bits (79), Expect(2) = 0.004
 Identities = 13/21 (61%), Positives = 19/21 (90%)
 Frame = +3

Query: 30  FTEAESNMNDLVSEYQQYQEA 92
           +  A+SN+NDL+SEYQQY++A
Sbjct: 256 YFSADSNLNDLISEYQQYEDA 276



 Score = 21.8 bits (44), Expect(2) = 0.004
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 12  GMDEMEFTEAESN 50
           GMD +EFTE + N
Sbjct: 221 GMDPLEFTEIKRN 233


>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
          Length = 375

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +3

Query: 12  GMDEMEFTEAESNMNDLVSEYQQYQE 89
           GMD  +F EA++++ DL+S YQQ ++
Sbjct: 307 GMDSQQFEEADNDILDLISTYQQCED 332


>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
          Length = 1458

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 235  DSYTVSGETCFLTFNRQHD*TPGYDKL-FERTQSV 336
            D Y+ +G+  FL+ ++ HD TPG  KL F+ T+ +
Sbjct: 1336 DEYSQNGKAEFLSTSKYHDRTPGLFKLEFKGTRMI 1370


>SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 416 SVYFRSAFTNFRSSSQRGLVEYQGM 342
           S YF + FTN    SQ+G++E QG+
Sbjct: 60  SDYFYAMFTNDMLESQKGVIELQGL 84


>SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)
          Length = 1120

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 424 YICAAETKWRIKIRYLPTLIQRRHLCHFVLLHRV 525
           ++C A    RI+ +   ++I  RH+C  V LHR+
Sbjct: 818 HVCTAVCLHRIRNKRRLSVISVRHVCTAVCLHRI 851



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 424 YICAAETKWRIKIRYLPTLIQRRHLCHFVLLHRV 525
           ++C A    RI+ +   ++I  RH+C  V LHR+
Sbjct: 841 HVCTAVCLHRIRNKRRLSVISVRHVCTAVCLHRI 874


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,937,839
Number of Sequences: 59808
Number of extensions: 348560
Number of successful extensions: 848
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)