Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0148
(642 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 61 7e-10
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 61 7e-10
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 61 7e-10
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 61 7e-10
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 61 7e-10
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 61 7e-10
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 60 2e-09
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 60 2e-09
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 60 2e-09
At5g40600.1 68418.m04928 hypothetical protein 27 8.0
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = +3
Query: 12 GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
GMDEMEFTEAESNMNDLVSEYQQYQ+AT
Sbjct: 402 GMDEMEFTEAESNMNDLVSEYQQYQDAT 429
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = +3
Query: 12 GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
GMDEMEFTEAESNMNDLVSEYQQYQ+AT
Sbjct: 402 GMDEMEFTEAESNMNDLVSEYQQYQDAT 429
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = +3
Query: 12 GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
GMDEMEFTEAESNMNDLVSEYQQYQ+AT
Sbjct: 402 GMDEMEFTEAESNMNDLVSEYQQYQDAT 429
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = +3
Query: 12 GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
GMDEMEFTEAESNMNDLVSEYQQYQ+AT
Sbjct: 402 GMDEMEFTEAESNMNDLVSEYQQYQDAT 429
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = +3
Query: 12 GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
GMDEMEFTEAESNMNDLVSEYQQYQ+AT
Sbjct: 402 GMDEMEFTEAESNMNDLVSEYQQYQDAT 429
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = +3
Query: 12 GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
GMDEMEFTEAESNMNDLVSEYQQYQ+AT
Sbjct: 403 GMDEMEFTEAESNMNDLVSEYQQYQDAT 430
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/28 (92%), Positives = 28/28 (100%)
Frame = +3
Query: 12 GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
GMDEMEFTEAESNMNDLV+EYQQYQ+AT
Sbjct: 402 GMDEMEFTEAESNMNDLVAEYQQYQDAT 429
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/28 (92%), Positives = 28/28 (100%)
Frame = +3
Query: 12 GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
GMDEMEFTEAESNMNDLV+EYQQYQ+AT
Sbjct: 402 GMDEMEFTEAESNMNDLVAEYQQYQDAT 429
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/28 (92%), Positives = 28/28 (100%)
Frame = +3
Query: 12 GMDEMEFTEAESNMNDLVSEYQQYQEAT 95
GMDEMEFTEAESNMNDLV+EYQQYQ+AT
Sbjct: 403 GMDEMEFTEAESNMNDLVAEYQQYQDAT 430
>At5g40600.1 68418.m04928 hypothetical protein
Length = 306
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 351 IFHQASLRARSEICKG*SKIDTFYLHMCSRNKMADQNSIPTNADSTQTPVPFC 509
+ Q L + E+ + S++D+ YL NK ++++PTNA+S P C
Sbjct: 148 LLRQCVLNSIPEVDEMQSRVDSMYLMSQLSNKK--RSTLPTNAESVIPEDPRC 198
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,230,685
Number of Sequences: 28952
Number of extensions: 233350
Number of successful extensions: 486
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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