Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0146
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142     30   2.6  
03_04_0006 + 16257288-16259522                                         30   2.6  
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    30   2.6  
03_02_0763 - 10977793-10978092,10978896-10978996,10979580-109796...    29   3.4  
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351...    29   4.5  
06_03_0854 + 25400855-25403741,25406174-25407708                       29   4.5  
09_03_0143 - 12723640-12723935,12723959-12724310                       29   6.0  
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    29   6.0  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    28   7.9  
03_02_0582 + 9624481-9626844                                           28   7.9  

>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
          Length = 407

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 22/84 (26%), Positives = 35/84 (41%)
 Frame = -2

Query: 658 ELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNKHRAPADIID 479
           E   GH +  + D     N  PGS +  +H+ VLN  +  R      A++  R   D ++
Sbjct: 313 ETQAGHWQNGVLDTLSTQNIIPGSPIAVNHSKVLNAVQEARRAAE-RAYDVPRVD-DKVN 370

Query: 478 RAPLPPNRVSNETMKVVVFQRRSR 407
           RA    N+ +N      V   + R
Sbjct: 371 RAVASANKAANAARVAAVKAAQKR 394


>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -3

Query: 408 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 256
           A+RSP    Y T L +   ARL    T    PA SP    +AV S   + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215


>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 226 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 125
           LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>03_02_0763 -
           10977793-10978092,10978896-10978996,10979580-10979648,
           10979787-10979857,10979946-10980100,10980348-10980477,
           10980946-10981013,10981335-10981592
          Length = 383

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 604 NSPPGSVLEPDHAGVL--NGDERFRHVTTLHAWNKH 503
           N+ PG +   +H      NG +RF H+  L++WN H
Sbjct: 182 NAIPGRLYGGNHIDNADGNGGDRFGHLVDLYSWNPH 217


>10_08_0267 - 16333239-16333820,16333904-16334842,16334920-16335172,
            16336837-16337063,16338189-16339388
          Length = 1066

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -1

Query: 644  TPALFFDRCTAPVKLPAWQCPRTGSRGS-FKRRRAFPPRHHSARLEQTP 501
            +PA   +R  APV    WQC   GS  +   R R  P      R E+TP
Sbjct: 912  SPAPPENRTKAPVPPAGWQCRHCGSTETPLWRERDGPAEAEHVRKEETP 960


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 408 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 283
           AKR+PT  T    P  AR  +++   +F   +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515


>09_03_0143 - 12723640-12723935,12723959-12724310
          Length = 215

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 643 HLRYSLTDVPPQSN--SPPGSVLEPDHAGVLNGDERFRHVTTLHAWNKH 503
           H+R +LTD+P   N  SP G ++E D A + N       V T HA   H
Sbjct: 84  HVRLTLTDIPVPFNDPSPAGPLIEMD-AKMANA---IADVNTFHAMEAH 128


>01_06_1406 -
           37073548-37073822,37073892-37074111,37074200-37074246,
           37074404-37074576,37075161-37075238,37075751-37075813,
           37075889-37075961,37076150-37076189,37076302-37076368,
           37076719-37078472,37079128-37079230,37080041-37080078,
           37080221-37080347,37081944-37082152
          Length = 1088

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 537 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 626
           +KR  P K PA S S+ LPG + + G  SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 616 PPQSNSPPGSVLEPDHAGVLNGDE 545
           P  +NS P +V +PD   +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762


>03_02_0582 + 9624481-9626844
          Length = 787

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = -1

Query: 629 FDRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLEQTPCARRYYRPRTASAQPSK 450
           FDR  +P++  A   PR+G  G     + + P  +   LEQ+P     +   T  AQ  K
Sbjct: 11  FDRRPSPME-EAEGLPRSGYLGQLHHHQYYQPHSNMLPLEQSPPTSTKHTSVTL-AQLLK 68

Query: 449 **NNESSGFSATIA 408
             N+  SG S  I+
Sbjct: 69  RVNDARSGSSTPIS 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,507,413
Number of Sequences: 37544
Number of extensions: 560238
Number of successful extensions: 1734
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1732
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)