Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0142
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  128   4e-30
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   5e-15
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.021
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.021
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.021
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.021
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.021
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.021
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)                     28   7.4  
SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  128 bits (309), Expect = 4e-30
 Identities = 59/82 (71%), Positives = 71/82 (86%)
 Frame = +2

Query: 2   TRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGVILAN 181
           TRAYFT+AT+IIAVPTGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGVILAN
Sbjct: 5   TRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGVILAN 64

Query: 182 SSIDITLHDTYYVVAHFHYVLS 247
           SS+D+ +HDTYYVVAHFHYVLS
Sbjct: 65  SSLDVVMHDTYYVVAHFHYVLS 86



 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 37/60 (61%), Positives = 41/60 (68%)
 Frame = +1

Query: 256 VFAIIGGFIN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 435
           VFAI  GF   +   TG   N    KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 90  VFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 149



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 570 SIE*YQNLPPAEHSYNELPIL 632
           S+E  Q  PPA H+YNELP +
Sbjct: 199 SLEWVQQSPPALHTYNELPFV 219


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 37/60 (61%), Positives = 41/60 (68%)
 Frame = +1

Query: 256 VFAIIGGFIN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 435
           VFAI  GF   +   TG   N    KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 4   VFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 63



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 570 SIE*YQNLPPAEHSYNELPIL 632
           S+E  Q  PPA H+YNELP +
Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 385 HFLGLAGIPRRYSDYPD 435
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 570 SIE*YQNLPPAEHSYNELPIL 632
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 385 HFLGLAGIPRRYSDYPD 435
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 385 HFLGLAGIPRRYSDYPD 435
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 570 SIE*YQNLPPAEHSYNELPIL 632
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 385 HFLGLAGIPRRYSDYPD 435
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 570 SIE*YQNLPPAEHSYNELPIL 632
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 385 HFLGLAGIPRRYSDYPD 435
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 570 SIE*YQNLPPAEHSYNELPIL 632
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 385 HFLGLAGIPRRYSDYPD 435
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 570 SIE*YQNLPPAEHSYNELPIL 632
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +3

Query: 288 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 410
           + FIY   + FL +KN  F+  YW+   YN F        W T
Sbjct: 14  VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56


>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
          Length = 319

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 559 ISHHQLNDIKIYHQQNIHIMNYQF 630
           I+HHQ + I I H Q+  I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319


>SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 364 NITFFPQHFLGLAGIPRRY 420
           +I F  +H+L + G+PRRY
Sbjct: 174 SIRFLVEHYLDIQGVPRRY 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,602,822
Number of Sequences: 59808
Number of extensions: 190684
Number of successful extensions: 334
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)