Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0134
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    60   2e-10
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    27   1.3  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   3.0  
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    25   5.3  
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    24   9.3  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 32/67 (47%), Positives = 36/67 (53%)
 Frame = -2

Query: 446 DITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFTGLSLNSYILKIQFFTIFIGVNI 267
           DI  HDTY+VVAHFHYVLS               P   GL  N  +  IQF+ +FIGVNI
Sbjct: 371 DIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFGLMYNETLASIQFWILFIGVNI 429

Query: 266 TFFPNIF 246
            F P  F
Sbjct: 430 VFGPQHF 436



 Score = 32.7 bits (71), Expect = 0.026
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -1

Query: 255 KHFLGLAGIPRRYSDYPD 202
           +HFLGL G+PRR  DYP+
Sbjct: 434 QHFLGLNGMPRRIPDYPE 451


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 336 YRPFIKFLYTKNSIFYNIYWSKYNIFSKHFLGL 238
           +RPF KFL  K  IF + YW +  +   ++LGL
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGL 232


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 105 NQRINLFSLNLPSSIE*YQNLPPAE--HSYNELPKKK 1
           N+RI L  L  P+S + Y+ +P  E  H  N+L K K
Sbjct: 148 NRRIVLEKLANPNSSKEYETIPTVENRHPLNKLSKTK 184


>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 186 FMKYMSLDNLNIVEVFQLNLKNVWKKCYIYSNKYC 290
           +++  + +N  + EVFQL +    KK + +S K C
Sbjct: 166 YVECSAKENTGVNEVFQLAVGLTIKKSFSFSKKSC 200


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 156 KYMNLMKKLYFMKYMSLDNLNIVEVFQLNLKNVWKKCYIYSNKYCKKL 299
           KY +L+ K+  ++  +  N  I  +  LN+  VWKK  + + +  KKL
Sbjct: 323 KYPDLICKI--IERTNATNEQIEGLMGLNVLRVWKKTELVALQLSKKL 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,374,505
Number of Sequences: 5004
Number of extensions: 23478
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)