Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0132
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    27   3.3  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   7.7  
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch...    25   7.7  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   7.7  

>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 376 VLAFVVEWIDENKELEWESTFSTSRQHESFRHVTELFRHIKGTFP 242
           VL   V ++D    L  ++  +   QHE  + + + +  +KG+FP
Sbjct: 70  VLERDVRYLDSKIALLIQNRMAQEEQHEFAKRLNDNYNAVKGSFP 114


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 479  KDIFIYHEGEGSLTNSIFLRMTHSLMLFQKIKF 577
            K + +  E + +L NS+ L+ TH  +++  +KF
Sbjct: 1524 KSLNLLLEDDENLDNSLVLKKTHPSIVYANLKF 1556


>SPAC1805.02c |||electron transfer flavoprotein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 176 RIADNLVLTSGEFSCEPV 123
           RI D LV+T+G+ S EP+
Sbjct: 59  RIEDTLVVTAGQTSSEPI 76


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 453 NASTTGRSRGKPRGLLSRTKDSKGAKSLPLLSNG 352
           +A TTG S GKP G  + T   KG  +      G
Sbjct: 264 SAPTTGFSFGKPAGQAASTATDKGTTTTSSAGTG 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,703
Number of Sequences: 5004
Number of extensions: 61873
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)