Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0132
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047     31   0.64 
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983...    29   2.6  
11_06_0289 - 21969248-21973516                                         28   7.9  
11_06_0185 + 21018045-21022307                                         28   7.9  
03_02_0493 - 8866685-8866888,8866989-8867059,8867143-8867416,886...    28   7.9  
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    28   7.9  

>01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047
          Length = 440

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 224 NFSHWHGVFFKYDKFIRIADNLVLTSGEFSCEPVQLEEFHPVXL*C 87
           +F HW     K +KF R  DNL+L   +      QL  FH + L C
Sbjct: 54  DFKHW-----KVEKFARFVDNLLLIRSKVDLHTFQLYWFHYLPLNC 94


>01_06_0496 -
           29795490-29796638,29796811-29796870,29798168-29798371,
           29798739-29798984,29799375-29799464
          Length = 582

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 120 LDWFTTKLTAGQNKIIRNSNEFVIFKEDSVPMTEIMKM 233
           +D F T +T    KI RNS +F     DSVP +++ ++
Sbjct: 278 VDSFQTNMTVEPEKIKRNSRKFSSSAADSVPDSQLSEL 315


>11_06_0289 - 21969248-21973516
          Length = 1422

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 150 GQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEG-KVPLICRKSSVTCLKDSCCLEVLKVD 323
           GQ+ ++ + NE   F+E    + EI + L E  K+  I  K     L+D C L +LK D
Sbjct: 631 GQHAVVLDQNEEAYFEEVEQKIEEIKQELKEQLKIKWIVDKIK-HHLQDQCPLIILKFD 688


>11_06_0185 + 21018045-21022307
          Length = 1420

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 150 GQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEG-KVPLICRKSSVTCLKDSCCLEVLKVD 323
           GQ+ ++ + NE   F+E    + EI + L E  K+  I  K     L+D C L +LK D
Sbjct: 629 GQHAVVLDQNEEAYFEEVEQKIEEIKQELKEQLKIKWIVDKIK-HHLQDQCPLIILKFD 686


>03_02_0493 -
           8866685-8866888,8866989-8867059,8867143-8867416,
           8867666-8868036,8868127-8868482,8868558-8868630,
           8869307-8869412,8869667-8869760,8870616-8870680,
           8871655-8871927
          Length = 628

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 419 GFPLDRPVVDALFKVPNMYFKDIFIYHEGEGSLTN 523
           G+P D P++D+L  V   Y   +F++ EG  S  N
Sbjct: 319 GYPEDSPIIDSLEFVDQEY---VFVHPEGSSSSMN 350


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 8/24 (33%), Positives = 19/24 (79%)
 Frame = +3

Query: 168 RNSNEFVIFKEDSVPMTEIMKMLD 239
           RN+ + V++ ++S+P T +++M+D
Sbjct: 839 RNAGQVVLYPKESMPATHLLRMMD 862


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,009,180
Number of Sequences: 37544
Number of extensions: 360575
Number of successful extensions: 805
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)